CANTATAdb - search

Detailed information on CNT30687691

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3021339	Triticum urartu	Citrullus lanatus	30.8	43.38	80.73	275	forward
CNT30308418	Triticum urartu	Triticum aestivum	58.12	71.98	94.8	519	forward
CNT30400472	Triticum urartu	Triticum turgidum	86.23	77.23	94.29	770	forward
CNT3035176	Triticum urartu	Cucumis melo	27.44	44.55	81.63	245	forward

Expression of CNT30687691

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MACCSIWSFRYNPQPPVPIGASWPSIMFSVTPLR*

>peptide 2 (31 aa)
MDCNHLQRMGCSLTGRVRMPCPQHMVRTEHL*

>peptide 3 (78 aa)
MTGMSGCMRATWGCMRVMSGCMRAMLGCTREKWGCMMATLGCKMATSDYKPVMLDYSSEMWGYSLVMLGCSSEMWGCS*

>peptide 4 (43 aa)
CSSEKSDCTGSSSLGCLENKHVKDCTWPKKDCSSVKWGCSSAM*

Sequence

>CNT30687691
CTGTAGTTCGGAGAAGTCTGACTGTACGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGC
TCGGTGAAGTGGGGCTGTAGTTCGGCGATGTAGGGCTGTATGAGGGCGAGGTAGGGCTGTATGACGGGGATGTCGGGCTGTATGAGGGCGACGTGGGGCT
GTATGAGGGTGATGTCGGGCTGTATGAGGGCGATGTTGGGCTGTACGAGGGAGAAGTGGGGCTGTATGATGGCGACGTTGGGCTGTAAGATGGCGACGTC
GGACTATAAACCGGTGATGTTGGACTATAGCTCGGAGATGTGGGGCTATAGCTTGGTGATGTTGGGCTGTAGCTCGGAGATGTGGGGCTGTAGCTAGGAG
ATGTGGGGCTGTAGCTGGGCGATGCAGGGCTGTATGATGGAGAAGTGGGACTGTAACCATGTCCTGGCCCTGGGCTGAACACCGGAGAAGATGGACTGTA
ACCACCTCCAGAGGATGGGCTGTAGTTTGACGGGACGGGTGAGAATGCCATGCCCCCAACATATGGTGAGAACTGAGCATCTGTAATTGGGGAAGCCCTG
AAATTTGGACTCAACATTGGTGACATCATTCCTCCATCACGGTACGGTGTCGCGGACATGGGTGAACGCGCTGGTGTCATGCCATAGTCCAGACCTTCAA
CATAGCTTGGGAGTTGAAGCTCAATGGCCTGCTGCAGCATCTGGTCATTCAGATACAATCCACAGCCTCCTGTACCAATAGGAGCAAGCTGGCCAAGCAT
AATGTTCTCAGTCACACCTCTCAGGTAATCAGATTCCGCATATACAGCAGCATCAAGCAAGATATCCACTGTTTCTTCAAAAGAACATCTCAT