Detailed information on CNT30687678


BLAST search results

BLAST vs Swiss-Prot:
sp|Q37550|ATP9_MALDO, E-value = 5e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537800Triticum urartuEucalyptus grandis29.356.787.45231forward
CNT30550185Triticum urartuIpomoea triloba29.8655.5694.47235forward
CNT30438768Triticum urartuAegilops tauschii25.79101.596.55203forward
CNT30141896Triticum urartuLolium perenne31.2620.3689.43246forward
CNT3036889Triticum urartuCucumis melo29.3513.3887.88231forward
CNT30104673Triticum urartuOryza rufipogon30.6234.3896.68241forward

Expression of CNT30687678

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MARKSIFNNYVQKVQNSLLGFSWREKPSSYICE*

>peptide 2 (34 aa)
MCKKSKIAYWGSVGEKSLLPTSASKGQPFLLIHR*

>peptide 3 (40 aa)
DMTFFTSVTTFSHFFFDLMTFYAIGKRMRSERPSLGQTMQ*

>peptide 4 (49 aa)
MIRSTWACTSIIFKYWVMRTTNLIHIITICKVCHILKKMSCGLKIIRYR*

Sequence

>CNT30687678
AGATATGACTTTTTTTACATCTGTAACTACATTCTCACATTTCTTTTTTGATCTCATGACTTTTTATGCGATCGGAAAACGAATGAGATCAGAAAGGCCA
TCATTGGGGCAAACAATGCAATAGCTTCGGTGAGAGCAAAGCCCAAAATGGCATAACCAAATGATTGTTTAGCCAATGATGGATTTCGCGCCACGGAATG
AATCAAAGAACTGAGGACGTTTCCAATACCGACAGCAGCTCCGGCTAAAGCAATTGTAGCAGCTCCGGCACCTATTGATTTAGCACCTTCTAACATCTCG
AGTCGAGAAAACACTTTTCTTGTCACGTTTTTCCTTCGCTGTTCTTTCTTGGATTTCTTGTTGATGATTCGAAGTACTTGGGCCTGCACCTCCATAATTT
TCAAATATTGGGTTATGCGGACCACTAATTTGATACATATTATCACAATTTGCAAGGTTTGTCACATATTAAAGAAAATGAGCTGTGGATTGAAAATCAT
CAGGTATAGGTAATCATCAGGTATAGGTATAGGTAGGGGAGCAGCTCCCCCTTGTGGCTGGGGTAGACTCTCAGCAGCTTGGTTTATGCATGGCACGAAA
ATCTATCTTTAATAATTATGTGCAAAAAGTCCAAAATAGCCTATTGGGGTTCAGTTGGCGAGAAAAGCCTTCTTCCTACATCTGCGAGTAAGGGGCAACC
TTTTTTATTAATTCACAGGTAAGGCAAAGTGCTTTCTTTTAAAGAAGCATCTGGTTCCATCTTTCTTTCGTTAGTTAAGCCACCTTT