Detailed information on CNT30687393


BLAST search results

BLAST vs Swiss-Prot:
sp|P17933|RR2_WHEAT, E-value = 2e-78

BLAST vs NONCODE:
NONATHT002193, E-value = 6e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703171Triticum urartuQuercus lobata61.72.7487.16327forward
CNT30291829Triticum urartuTriticum aestivum10013.4499.81530forward
CNT3057337Triticum urartuAmborella trichopoda61.898.882.32328forward
CNT30576494Triticum urartuOryza barthii29.6220.2192.99157forward

Expression of CNT30687393

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLLNLLLFFWYQQLRNFFPDLLHQKLNHKLLIKNEPF*

>peptide 2 (59 aa)
MSTFTLCRNVRGHFRIPFLNTMTKMNSCFYHLFQINVPISSCHFFHTSFFLILPFHYGI*

Sequence

>CNT30687393
GTTTTCGTAATCGACCAATTCGTTAACATACCACTGAACCACTTTTTATTAACATAATGACAACGAGCCCTTATTGCAGCTGATGCTACTAAATCTGTTG
CTCTTTTTTTGGTACCAACAATTAAGAAACTTTTTCCCTGACTTGCTGCATCAAAAACTAAATCACAAGCTTCTGATAAAAAACGAGCCGTTCTAGCGAG
ATTTATAATATGAGTACCTTTACGCTTTGCCGAAATGTAAGGGGCCATTTTAGGATTCCATTTCTTAATACCATGACCAAAATGAACTCCTGCTTCTATC
ATCTCTTTCAAATTAATGTTCCAATATCTTCTTGTCATTTTTTCCACACTTCCTTTTTTTTAATCCTACCATTCCATTACGGAATTTAGTTCTTTTTGAA
GATTAAGAAAGATCCGAAATAGCTTGAAATAAATAATAATTGTTCCGAGAGAACCTTGTACTAAGATAAGAGTTGGCCATTGATACATGGTATAAACATA
ACCACCTTAATGAATTAACTGACTTGTTTT