« Back to Triticum urartu search


Detailed information on CNT30687250


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5SCY2|NU2C_HUPLU, E-value = 2e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690671Triticum urartuOryza sativa36.5317.3499.06320forward
CNT30617222Triticum urartuSesamum indicum30.0296.6984.03263forward
CNT3021542Triticum urartuCitrullus lanatus23.5234.5695.15206forward
CNT30195004Triticum urartuPisum sativum8.4525.6191.8974forward
CNT30607759Triticum urartuGossypium raimondii36.6410.7385.67321forward
CNT30229354Triticum urartuAnanas comosus18.2624.3286.88160forward
CNT30627097Triticum urartuDaucus carota33.7957.0387.5296forward
CNT30622146Triticum urartuCajanus cajan35.3921.7585.81310forward
CNT30153781Triticum urartuPrunus persica26.1420.5295.2229forward
CNT30425623Triticum urartuPapaver somniferum24.3246.7192.49213forward
CNT3057972Triticum urartuAmborella trichopoda7.6521.291.0467forward
CNT30150988Triticum urartuBrachypodium distachyon33.1116.6198.97290forward

Expression of CNT30687250

Peptides detected in this lncRNA

>peptide 1 (34 aa)
SILYKSPSYLIEKGPMIPSRSYLGSQTPSLSMKS*

>peptide 2 (41 aa)
MDFLCGILMDRASLLSATRSSALELVVIDPNPLVWNIVFSK*

>peptide 3 (36 aa)
VYFVQEPLLSDRKGSHDPEPILPWLANPKFVYEELI*

Sequence

>CNT30687250
GTCTATTTTGTACAAGAGCCCCTCCTATCTGATAGAAAAGGGTCCCATGATCCCGAGCCGATCTTACCTTGGCTCGCAAACCCCAAGTTTGTCTATGAAG
AGCTAATCTAATTGTATTTTTTTCTAGAATGGATTTCTTATGTGGAATACTAATGGATAGGGCTTCGTTGCTAAGTGCTACAAGATCTAGTGCACTGGAA
CTCGTGGTTATAGACCCGAATCCTTTAGTATGGAACATTGTCTTTTCCAAGTAAAAACCCCTAGTATATGAAAGAATGAAAATGTGCTTTCGTTCTTGTG
GAATAAGAAGCCCTCGTACCTTAATGAAAGGAAAATCGTAATTTTTCGTTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTATCACTAA
AATACCTGATAGGGCTAAGCGGAACGAAAAGGGTTTTCCATGAGATGGTAAATGAAAACGATTAGTCCCACACGAGGTTTGGGAATAAGTGATTGTCTGA
TAATGAGCAAGGAATATACGTCTTTCTGCTAAAGAGGATCTATTAAACTCATAATTCATTGATGAAAAGGGGCTAGGGAAAGCTTAAACCCAAGTCCTAC
AGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTCTTGAAGCTCGATCTCCCCCCCAGAT
GAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTAGCCTCATTAGACCGTAGATCTCTCT
TGGTATATCCAGACAATAGGTAGGAACATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGC