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Detailed information on CNT30686589


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SK39|SBP3_ARATH, E-value = 4e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691502Triticum urartuOryza sativa9.0823.3697.7589forward
CNT30670851Triticum urartuSetaria viridis12.7662.1989.6125forward
CNT30519964Triticum urartuSetaria italica23.5732.1391.34231forward
CNT30442397Triticum urartuAegilops tauschii76.0275.1893.15745forward
CNT30667282Triticum urartuTriticum dicoccoides31.6369.6696.77310forward
CNT30364531Triticum urartuSorghum bicolor18.9858.1389.78186forward
CNT30595654Triticum urartuOryza meridionalis16.1227.0194.94158forward
CNT30369561Triticum urartuOryza glumipatula16.1225.8295.57158forward
CNT30100122Triticum urartuOryza rufipogon16.1227.6795.57158forward

Expression of CNT30686589

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKMSLCKPAALNLYGRLHIQRTASYRAILQLNQALEQQVKAETM*

>peptide 2 (40 aa)
FLYRVSTILTSAYIQTATINWRKLWFPQNHRLGNYLKWLC*

Sequence

>CNT30686589
TTTCTTTATAGAGTGAGTACTATATTAACGTCAGCATACATCCAGACTGCCACAATAAACTGGAGAAAACTTTGGTTTCCCCAAAATCACCGGCTAGGAA
ACTATTTGAAGTGGCTATGTTGACTACCACTGCCAAGCCAAAATACAATGAAAATGAGCCTATGTAAACCCGCAGCACTGAATTTATACGGAAGGCTGCA
CATTCAGCGCACTGCTTCATACAGAGCCATACTCCAGCTAAATCAAGCCTTAGAACAACAAGTCAAAGCTGAAACAATGTGAAAATTATAAGGATCAATC
ATCAATTGCTCCATTGATCTTAACAACAGACCACAGTACTATTATTTCAGTTCACCAATTGTCGCCAACAAACACGCCCTCAGATTATTATTATTTGACG
GTCATACGCAGGGAGCAACAGGATACAGACACACACGGTGGAGCTAGGAGGATACGATACTAGTTGAGGACGGTGACGGTGGCGGAATTGACTTCACTTG
ACATCAGGCGGCGAGGCGGGCGACGACGGGGTACTTGGCCTGGAACTTGGACTCCCAGTCGGCGAGCACGCCGAGCTCCTTGTCGGAGAGGCCGGAGAGG
TCGCCGGAGACGTCGGCGGCGTCCTTGGACATCTTGGCGAGCGCGCGGGCGGCCTCGCAGCCGGCGAAGAGCGCGTAGTCGCCGCCGGGCCCGTAGAAGC
CGCGCCCGGCCGAGACGTCGAAGACCTTGCCGCGGATGGCGACGTAGATCGGCTTGGACGCGTCGGTGCCGTCGTACGCCCGCAGCTGCGCCGCCGTCAG
CTCCGTCGCCATCTCGATCTAGCTCTGCGCGCTGCGCGTGGTAGGTGCGCTGCGAGTGAGGCTGTGGGTGGGGTGGGGTGGGGGAGAGTGGGGTGGATGG
GCTGAGGGAGAAGAGGAGGAGAGGTCTGCGTCAGCCACACGCTGACGGCTGAATTGATTCCTACGGGATGGGATGGGAGT