Detailed information on CNT30686005


BLAST search results

BLAST vs Swiss-Prot:
sp|P21569|CYPH_MAIZE, E-value = 7e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517653Triticum urartuJuglans regia63.3511.6583.41223forward
CNT30618033Triticum urartuSesamum indicum54.2623.6481.15191forward
CNT30552830Triticum urartuOryza glaberrima20.7419.1191.7873forward
CNT30597524Triticum urartuFraxinus excelsior14.223.589050forward
CNT30706413Triticum urartuPrunus avium40.9143.6482.64144forward
CNT30724737Triticum urartuLupinus angustifolius35.5118.4980.8125forward

Expression of CNT30686005

Peptides detected in this lncRNA

>peptide 1 (77 aa)
PKPTTEISSDGPGEDTTHDTRLSYLDRRHDTGHTGQLQGTVQMKNWEPLVLGPALAMERIPGLVCLWTNFSSANFSP*

>peptide 2 (30 aa)
MDSPPVPLPLVKSPPWHMKSGITRWKALPL*

Sequence

>CNT30686005
CCTAAACCAACCACGGAGATCTCATCGGACGGACCAGGGGAAGACACGACACACGACACACGACTCTCTTATTTAGATCGACGACACGACACGGGACACA
CGGGCCAATTGCAGGGGACGGTGCAGATGAAGAACTGGGAGCCGTTGGTGTTGGGCCCGGCGTTGGCCATGGAGAGGATCCCGGGCTTGGTGTGCTTGTG
GACGAACTTCTCGTCGGCGAACTTCTCGCCGTAGATGGACTCGCCGCCGGTGCCGTTGCCCCTGGTGAAGTCGCCGCCCTGGCACATGAAGTCGGGGATC
ACGCGGTGGAAGGCGCTGCCCTTGTAGTGCAGCGGCTTGCCGCTCTTGCCGA