CANTATAdb - search

Detailed information on CNT30685635

BLAST search results

BLAST vs Swiss-Prot:
sp|P43650|YMF19_WHEAT, E-value = 3e-60

BLAST vs NONCODE:
NONMTRT001825, E-value = 2e-29

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30501657	Triticum urartu	Coffea canephora	39.98	7.83	93.51	385	forward
CNT30592620	Triticum urartu	Musa acuminata	39.25	16.62	91.8	378	forward
CNT30437037	Triticum urartu	Aegilops tauschii	34.27	95.38	99.09	330	forward
CNT30598800	Triticum urartu	Fraxinus excelsior	36.45	94.35	93.45	351	forward
CNT30480890	Triticum urartu	Arabidopsis halleri	33.75	97.6	93.23	325	forward
CNT30335348	Triticum urartu	Cynara cardunculus	37.07	98.62	91.04	357	forward

Expression of CNT30685635

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLPCPCGTCVSIMFFQQVIRLEEVLYEDFEIK*

>peptide 2 (84 aa)
VSTKGNDERAVLCTLKEKLCDRSPLSLSSIPPNHFGYQWPRDLHEQRSLHKNNYMKNLLASSNLEITEHIESVFVMRPFSSGNL*

>peptide 3 (29 aa)
MNRTSTSSVTPTALRLYTPTQLALALGPPA

Sequence

>CNT30685635
GGGTAAGCACAAAAGGTAATGACGAGAGGGCCGTCCTATGTACCCTGAAAGAGAAACTATGTGATAGAAGCCCGCTTTCCCTCTCTTCTATCCCACCTAA
CCACTTCGGGTATCAGTGGCCTCGTGATCTCCATGAACAGAGATCACTACACAAAAACAACTATATGAAAAACTTGCTTGCTTCTTCGAATCTCGAAATA
ACAGAACATATAGAAAGTGTTTTTGTGATGAGACCATTCTCTTCGGGGAACCTATAGAAAGATTATCAGACGGCTTTCATGATATTATGCTTCCTTGCCC
GTGTGGAACATGTGTGAGCATTATGTTTTTCCAACAAGTGATCCGACTGGAAGAAGTGTTATATGAGGACTTCGAGATCAAATAGAGAATCTGTCTCTCC
ATTCCTCATGAGCCACTTATTTCTCCGAAATCAGAGATTAGAGTGATTTTCCTCCTTTTTCCCAAATAGTCGACGGTCTTACACCATTGGGATACTTCGG
ATAAACTGGAGTACATATATGAGAGACCGGTGCTAAAACCTTTTCTCGAGATATCTTCCAGATTCTTAGGCTGCAACTAATTCAGCTTCCGCTTCTGGGA
GATCAGACGGAGCTCGATTAGTTTCTGCTAGACGAGGAATAAGGAACATAACCAATACGGGGAACAAGGGAATACCGGACCATATCTGCTTTTGCGCCAT
GACAATCTCACTCGAATTACAGGGACCTACACATATTAGTACAGTAATAAGAATAAGACCAATAGAGACTTCATAAGGGACCATTTGAGCTGCAGATCGT
AATGCTCCTAGAAAGGCATATTTCGAATATAGAGGACGTTCCCAACAATCCACGAGAATATCATACCCAACTATGAACCGTACGAGCACATCCTCTGTCA
CCCCCACCGCGCTTAGGCTCTATACCCCAACCCAACTTGCTCTGGCCCTGGGTCCTCCCGCAT