CANTATAdb - search

Detailed information on CNT30685586

BLAST search results

BLAST vs Swiss-Prot:
sp|P12463|PSBA_WHEAT, E-value = 3e-78

BLAST vs NONCODE:
NONCQUT000002, E-value = 4e-115

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30378687	Triticum urartu	Arabidopsis thaliana	65.27	33.24	91.04	357	forward
CNT30598581	Triticum urartu	Fraxinus excelsior	50.46	78.19	92.39	276	forward
CNT30499058	Triticum urartu	Digitaria exilis	16.45	21.18	87.78	90	forward

Expression of CNT30685586

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MSSHNIISFFLLTKFVTLISGFIFRLTRSLIRIISKYQIRSVCDPQKEKRVVLVNIKEKTCSSSIKNSSKNAEPNR

Sequence

>CNT30685586
CTTCAAAAATTCTTATATGTTAGCAGAAAACCTTATCCATTAATAGATGGAACTTCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGT
GCATTACTTCCATACCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTTGAAAGCCATAGT
ACTAATACCTAAAGCAGTGAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATT
AATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCGGATTCATTTTCAGGTTGACCAG
GTCATTGATACGTATAATATCCAAATACCAAATACGCTCAGTGTGTGATCCACAGAAAGAAAAAAGAGTTGTTTTGGTGAACATCAAAGAAAAAACTTGC
TCTTCTTCCATAAAAAATTCTTCTAAAAATGCCGAACCCAATCGTTG