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Detailed information on CNT30685532


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 8e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695986Triticum urartuOryza sativa32.9433.0194.82309forward
CNT30522718Triticum urartuSetaria italica22.4928.6396.21211forward
CNT30300806Triticum urartuTriticum aestivum53.361.298.4500forward
CNT30224983Triticum urartuHordeum vulgare27.7242.6297.31260forward
CNT30394515Triticum urartuTriticum turgidum57.4665.5797.77539forward
CNT30589400Triticum urartuMusa acuminata33.3745.7691.05313forward
CNT30129910Triticum urartuCorymbia citriodora33.4849.8492.36314forward
CNT30721767Triticum urartuTriticum spelta53.266.4498.2499forward
CNT30345523Triticum urartuEragrostis tef33.5834.9694.6315forward
CNT30579967Triticum urartuEchinochloa crusgalli33.6931.0194.94316forward

Expression of CNT30685532

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

>peptide 2 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 3 (31 aa)
RVSERQVVKQKNRDALIDLKNNQIHYTNTIL*

>peptide 4 (30 aa)
MSTTWQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 5 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFCFG*

Sequence

>CNT30685532
TCAGAGTTTCAGAGAGACAAGTAGTTAAGCAGAAGAACAGAGATGCCTTGATTGATCTGAAAAATAACCAGATACATTACACAAACACCATCTTGTAGTG
TACACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGA
CACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGG
CGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCCAGGGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACAT
GGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGC
GGGTCCACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGTGGATGACCTCCAGCTCCCGGTTCT
TGGCGAAGGTCTCGGGGTCGGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCACCGGGGAACTCGCCGGTGAGGTAGAGCACGCGGTCGGAGCCGTACCA
CGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTG
CCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGA
GGCGCTGGTGGTCGTTGGTGCTGTGGAGTGAAGCGGGA