Detailed information on CNT30685518


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555688Triticum urartuOryza glaberrima48.3136.1385.58215forward
CNT30436135Triticum urartuAegilops tauschii65.1774.3692.07290forward
CNT30258429Triticum urartuAvena sativa67.1957.586.62299forward
CNT30597252Triticum urartuOryza meridionalis62.9261.5485.71280forward
CNT30371385Triticum urartuOryza glumipatula62.9243.6881.43280forward
CNT30104436Triticum urartuOryza rufipogon62.751.186.38279forward

Expression of CNT30685518

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGKAPIWSGSGNRPA*

>peptide 2 (62 aa)
FLEPCWYMNMDIHIFLGTNKKDKWRRKTQSNVRVDKTAMALYMWPVVSELFRPCRTPRSPVA*

Sequence

>CNT30685518
CTTTCTCGAGCCATGTTGGTACATGAACATGGACATACACATATTCTTAGGAACAAACAAGAAAGATAAATGGAGAAGGAAAACCCAAAGCAATGTCAGA
GTTGACAAAACCGCAATGGCACTTTATATGTGGCCCGTGGTGAGTGAGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAA
GCTGACGCACTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACATACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGT
GTGGCGTCGGTGCACCCGAACATAGGCAAGGCACCCATTTGGAGCGGATCAGGTAATCGACCTGCTTGAGGAGGGCCTCCGTGCTGAGCGGTGGCAGGTA
GGACAGGGTCTCGAACTTCTTGATGCCCTCGATGGGCCACACCTG