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Detailed information on CNT30685477


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004692, E-value = 1e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3031228Triticum urartuTheobroma cacao16.3244.7690.09111forward

Expression of CNT30685477

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVIPLSRSAFSLSSTQAYLKDLLFISAASFSNLS

>peptide 2 (33 aa)
EKQANKLQSNNLHFTTNQSQGHRSLAEAGIEIQ*

>peptide 3 (38 aa)
MAALVTLAPVGSFFSTPLMTPTATVCLMSRTAKRPRGG*

Sequence

>CNT30685477
GAAAAACAAGCTAACAAGTTGCAATCTAATAACTTGCATTTCACAACAAATCAGTCTCAGGGGCACAGGAGTTTAGCCGAAGCAGGAATAGAAATACAGT
AATTAAACGACAGACAGATCATTGCTCGCTCGGGATAAGAGTCTGAAGCAACAAAAGCAATGACCGTGAACAAAATCCTTCTGCAAGATAGCGCGCCTAT
TTCTTCTTGATGGCAGCCTTGGTAACCTTGGCGCCGGTGGGGTCCTTCTTCTCCACACCCTTGATGACACCAACAGCAACCGTTTGTCTCATGTCACGCA
CAGCGAAGCGGCCAAGAGGAGGGTAGCGTCACCGTTCTTCAGGAACTTGGGCGCAGCCTCAATCTCCTTACCAGATCGCCTGTCAATCTTGGTCACCAGC
TCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGACCAGGGTGGTACCAGTAATCATGTTCTTGAT
GAAGTCACGGTGACCAGGGGCGTCAATGACGGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGGCAATATCAATGGTGATACCCCTCTCACGCTCG
GCCTTCAGCTTGTCAAGCACCCAGGCGTACTTGAAAGACCTCTTGTTCATCTCAGCGGCTTCCTTCTCAAACCTCTCGAT