Detailed information on CNT30685460


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QVG9|CLPC2_ORYSJ, E-value = 9e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672972Triticum urartuSetaria viridis36.576.8988.44173forward
CNT30717839Triticum urartuMalus domestica golden25.7424.0286.89122forward
CNT30101573Triticum urartuOryza rufipogon37.7621.1381.56179forward

Expression of CNT30685460

Peptides detected in this lncRNA

>peptide 1 (93 aa)
LRVHINDDRVALLDLPAQNLLREAVLQEPHDGPPQRPRSVARVVPFVHDPLLELLRHLQVDVLGLEPAAVLLVRVEVEPDLPPPLLNHAAPNI*

>peptide 2 (39 aa)
SGSTSTMTESPSLTSPPKIFSARLSSRSLMMALLSGRAP*

>peptide 3 (96 aa)
MSLVLSLLLSFSSESRSNPIFLPPFSITLLPTFDVIIRSVFLKSTVLPLLSVNLPSSRIWSIMLNTSGCAFSISSKSTTLYGRRRTASVSCPPSVYP

>peptide 4 (29 aa)
MCLLNLIKKHNAVWPPSNRLRQLPTFSVSH

Sequence

>CNT30685460
CTCCGGGTCCACATCAACGATGACAGAGTCGCCCTCCTTGACCTCCCCGCCCAAAATCTTCTCCGCGAGGCTGTCCTCCAGGAGCCTCATGATGGCCCTC
CTCAGCGGCCGCGCTCCGTAGCTAGGGTTGTACCCTTCGTCCACGACCCGCTCCTTGAACTTCTCCGTCACCTGCAGGTTGATGTCCTTGGTCTTGAGCC
TGCTGCTGTCCTTCTCGTCCGAGTCGAGGTCGAACCCGATCTTCCTCCCCCCCTTCTCAATCACGCTGCTCCCAACATTTGATGTCATTATCAGGAGCGT
GTTCTTGAAGTCCACTGTTCTCCCCTTGCTGTCGGTTAACCTTCCGTCTTCCAGGATCTGGAGCATCATGTTGAACACATCCGGATGTGCCTTCTCAATC
TCATCAAAAAGCACAACGCTGTATGGCCGCCGTCGAACCGCCTCCGTCAGCTGCCCACCTTCAGTGTATCCCAC