Detailed information on CNT30685413


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-153

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-136

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30583253Triticum urartuEchinochloa crusgalli38.4534.0389.46721forward

Expression of CNT30685413

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSEDSTSSVMVLPVRVLTKICMPPRRRSTRWRVDSFWML*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSDDSTSSVMVLPVRVLTKICMPPLRRSTRWRVDSFWML*

>peptide 3 (31 aa)
MIFRQELMHKYRYLQVLTQQDTISVKSTVLL*

>peptide 4 (39 aa)
MFKFDHKLKRSVNIYDFQTRTDAQVQIPSSFDTTRYNIS*

>peptide 5 (62 aa)
MARHLLATTEAEHQVEGGLLLDVVVRQSAAILKLLTSKDQTLLVRWDTLLVLDLRLHIVNGV*

>peptide 6 (30 aa)
KNRHTFRAHLFIQVHPNLLQHSIKFRHSQI*

>peptide 7 (68 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPVRVFTKICICKHKVYQNHNKALVIMKLQNIKHI*

>peptide 8 (87 aa)
MQLRYIRSQIKHRCNIKRLMSATKSERLSRNLAESINHTRLDEHNQHQHQLRLKSADLPDNPGITVRDFTTTEPNQQQSINKPIVSN*

>peptide 9 (62 aa)
KKQAHVQGSFIHSSSSKSAAAQHKVQTQPDITLDHSTVATKNKTRRGHADNHNGVHRKTTDS*

Sequence

>CNT30685413
AAAAAAACAGGCACACGTTCAGGGCTCATTTATTCATTCAAGTTCATCCAAATCTGCTGCAGCACAGCATAAAGTTCAGACACAGCCAGATATAACGCTA
GACCACAGCACGGTAGCAACAAAGAACAAGACCAGACGAGGACACGCTGACAATCACAACGGAGTACACAGAAAGACAACCGACTCGTGAGCCCAGAGAC
ATAAGCAGCTCCATGGCCAGGCACTTACTGGCCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGG
CCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCTG
AAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGCCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTT
CTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATC
TTCGCCTTCACGTTGTCAATGGTGTCGGATGACTCGACCTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGCCACCCCTGAGGC
GGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTC
CGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTC
ACAAAGATCTGCATCTGCAAACATAAAGTGTACCAAAACCATAATAAGGCACTCGTAATCATGAAACTGCAGAACATAAAGCATATATGAACCAGAAGGC
CATGATCCAAGAGAGACGAAATTGTAACTATGTCTTGAACTATTAGATAGCAGATTGATGTTCAAGTTTGACCACAAGCTAAAAAGATCAGTTAATATAT
ATGATTTTCAGACAAGAACTGATGCACAAGTACAGATACCTTCAAGTTTTGACACAACAAGATACAATATCAGTTAAATCAACAGTACTACTGTAAGCAA
ACACAATTGACTCTTAAGAGCAGAACCGGTGCACAAGAACGGATCCTCCAAACAACTACTAGGCCCAACAACTAACATAGGAACCAGTTTTGCTAAAGCA
CATCTAGGTGTGCCCAAGTATGCAACTCAGGTATATCCGTTCACAGATCAAGCATAGGTGCAACATAAAAAGGCTCATGAGCGCCACAAAGTCTGAGCGA
CTCAGCAGGAACCTAGCGGAATCAATCAACCACACACGCCTAGATGAACATAATCAACATCAACATCAGTTGCGTCTCAAATCGGCAGATCTACCCGATA
ATCCAGGCATAACCGTGAGGGATTTCACGACAACGGAGCCAAATCAACAGCAATCGATCAACAAACCTATCGTCTCGAACTAGTACTGCTAACACGGAAC
GAGCGGATCAACTAGAACACCTCTAATCGGCAGATCTACCGGATAATCCAAATCGAGAGGGATTTCGCGACAACCGACTACGGGGCAGATCAACAGCAAC
ATAATCAACGATAATAGCGAGGGGCGCGGTCTGAAATTCACGTACCTTGGAGGTGGGCGAGAAGGCCTTGGCTTCGATTCGATCGGAAACTTTCTTGGGG
TCGCTTGGCAGGGAGGATTGGATGAGTGGAGGAGGAGACGGGAGGGGAGGGGGATTTAAAGGGGGAAGAGTCCCG