« Back to Triticum urartu search


Detailed information on CNT30685379


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 5e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672589Triticum urartuSetaria viridis23.3819.487.1155forward
CNT30521203Triticum urartuSetaria italica23.3816.8187.74155forward
CNT307019Triticum urartuZea mays23.9814.2988.05159forward

Expression of CNT30685379

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRVSNFLMPSMGHTCKSD*

>peptide 2 (57 aa)
MHLILPPLLTLPRLAPLERRLTGRPAVDLSPWKGATEVADEAITVGAMAVLCRYIAC*

>peptide 3 (29 aa)
MYTLTDYNSSSAHIRWSSRLNCVLIDVGI*

Sequence

>CNT30685379
ATATGTGGCCCGTGGTGAGTGAGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCATG
TTGTCGAATCCGATGATGCGGACATACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGTGTGGCGTCGGTGCACCCGAACATAG
GCAGCTTCCACATTGTCCAGTACCGGGTCTCGAACTTCTTGATGCCCTCGATGGGCCACACCTGCAAATCAGATTGACAGTCATGTATACATTAACAGAC
TATAACTCTAGTTCTGCACATATCAGATGGAGTAGCCGGCTAAATTGTGTGCTGATTGACGTCGGGATTTGAAACTATTGTATGTAATTGACCATATGAA
AGTTCACATATGATTGTTATTGTCTTCCGTGAGGTAGAAAATGAGTAGAAAACAGAGACGATGTAGTTTACCTGCATGCACCTGATCCTTCCACCGTTGC
TGACGCTGCCGAGGCTAGCGCCGTTGGAGCGGCGGCTGACGGGGAGGCCGGCGGTGGACTTGAGCCCCTGGAAAGGAGCGACGGAGGTGGCCGACGAGGC
CATCACGGTGGGGGCCATGGCTGTGCTATGTAGGTATATAGCTTGCTAGGAGGAGGCACTCTG