Detailed information on CNT3068536


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002534, E-value = 8e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371460Leersia perrieriOryza glumipatula50.8857.693.75144forward
CNT30104694Leersia perrieriOryza rufipogon50.5355.4393.71143forward
CNT30578602Leersia perrieriOryza barthii49.4756.2293.57140forward

Expression of CNT3068536

Peptides detected in this lncRNA

>peptide 1 (40 aa)
STSNTLQYKNQHHVNLKIIFLTYKNQNQVEDLASHLLVNN*

>peptide 2 (28 aa)
MEGKRMHSFTAAIYTSWSSLKHSKSKCCF

>peptide 3 (47 aa)
MILLGYKGKERRKKTLRKNGGKANAFIHSSYLHLMVIFKTQQKQMLFQ

Sequence

>CNT3068536
AGCACAAGCAACACACTACAGTACAAGAATCAGCACCATGTTAATTTAAAGATTATATTCCTTACATACAAGAATCAGAATCAGGTAGAAGACCTTGCAT
CTCACCTACTTGTAAACAACTAAACAACCATACAAGCCGATGATCTTGCTAGGCTACAAAGGGAAAGAAAGGAGAAAAAAAACGCTAAGAAAAAATGGAG
GGAAAGCGAATGCATTCATTCACAGCAGCTATTTACACCTCATGGTCATCTTTAAAACACAGCAAAAGCAAATGTTGTTTCAG