Detailed information on CNT30685359


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 3e-140

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186317Triticum urartuSecale cereale52.1952.4597.14524forward
CNT30299182Triticum urartuTriticum aestivum75.471.2196.3757forward
CNT30552325Triticum urartuOryza glaberrima47.5151.1388.68477forward
CNT30440100Triticum urartuAegilops tauschii74.773.5396.4750forward
CNT30240158Triticum urartuAvena sativa50.549.3291.52507forward
CNT30665579Triticum urartuTriticum dicoccoides91.3395.1296.95917forward
CNT30362364Triticum urartuSorghum bicolor44.7244.1193.1449forward
CNT30596886Triticum urartuOryza meridionalis5150.2991.99512forward
CNT30369325Triticum urartuOryza glumipatula45.5245.1189.72457forward
CNT30603531Triticum urartuOryza punctata5146.9792.58512forward

Expression of CNT30685359

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

>peptide 2 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFCFG*

>peptide 3 (29 aa)
MAQRQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 4 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30685359
ACAAGTAGTTAAGCAGAAGAACAGAGATGCCTTGATTGATCTGAAAAATAACCAGATACATTACACAAACACCATCTTGTAGTGTACACACACCAACTCC
TCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCA
TCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGG
GTCGGCGAGGTGGTCGGCGAGGTTCTCCAGGGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTC
TTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGC
CGAGCGGGCCGCCGGCGACGCGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCG
GGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCG
GCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCACCGGGGAACTCGCCGGTGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCA
CCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGA
GAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGGTCGTTGGTG
CTGT