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Detailed information on CNT30685310


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 1e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371468Triticum urartuOryza glumipatula38.4428.3284.36326forward

Expression of CNT30685310

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MLFTCMHLILPPLLTLPRLAPLERRLTGRPAVDLSPWKGATEVADEAITVGAMAVLCRYIAC*

>peptide 2 (48 aa)
KTYIVDILYNITRPCIYIATDSIHIRACFLEPCCELFRPCRTPRSPVA*

>peptide 3 (45 aa)
MLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

>peptide 4 (29 aa)
MYTLTDYNSSSAHIRWSSRLNCVLIDVGI*

Sequence

>CNT30685310
TTAAAACGTATATAGTTGACATATTGTATAATATTACGCGTCCGTGCATATACATAGCCACCGATAGCATTCACATACGAGCATGCTTTCTCGAGCCATG
TTGTGAGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGACGCATGTTGTCGAATCCGATGA
TGCGGACATACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGTGTGGCGTCAGTGCACCCAAACATAGGCAGCTTCCACATTGT
CCAGTACCGGCCATCGTAGTACCCAGGAGATGCGTTGTGCTCACGGAAGATGAACCCAACCTTGCTGAACTCGAGGAGGGCCTCCGTGCTGAGCGGTGGC
AGGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCGATGGGCCACACCTGCAAATCAGATTGACAGTCATGTATACATTAACAGACTATAACTCTAGTTC
TGCACATATCAGATGGAGTAGCCGGCTAAATTGTGTGCTGATTGACGTCGGGATTTGAAACTATTGTATGTAATTGACCATATGAAAGTTCACATATGAT
TGTTATTGTCTTCCGTGAGGTAGAAAATGAGTAGAAAACAGAGACGATGTTGTTTACCTGCATGCACCTGATCCTTCCACCGTTGCTGACGCTGCCGAGG
CTAGCGCCGTTGGAGCGGCGGCTGACGGGGAGGCCGGCGGTGGACTTGAGCCCCTGGAAAGGAGCGACGGAGGTGGCCGACGAGGCCATCACGGTGGGGG
CCATGGCTGTACTATGTAGGTATATAGCTTGCTAGGAGGAGGCACTCT