Detailed information on CNT30685208


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 8e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223925Triticum urartuHordeum vulgare51.897.9788.91532forward
CNT30394802Triticum urartuTriticum turgidum71.4797.0995.23734forward

Expression of CNT30685208

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 2 (36 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSLGLPR*

>peptide 3 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

>peptide 4 (73 aa)
MGNISSTYQMLWGALLTVRRMVMRPPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACELSEMNWWMVC

Sequence

>CNT30685208
CAGTTGATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGA
CCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATG
GACGGACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTC
GAAGAGGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAACCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACC
TTGAGCTCGGCGGCGGTGTCGGGGTCGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGC
CGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTT
GGCGAACGTCTCGGGGTCAGCAGACAATCCGGCGGTGTCCCATCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGG
CCCAGGTACTTGGGACGGTCAGGGCCGTACCTACACATCCATTCATTCATCAGCAAGGTGCATTAGTCCAATGGTGTATCTTCATCAGGGGGAGCGAACC
ATGCATGGGAAATATTAGTAGTACGTACCAGATGCTCTGGGGCGCGCTCTTGACGGTCCGGCGCATGGTGATGCGGCCGCCAAAGTCGCCGACGCTGCGG
ACGAGGTCATCGCGCCGCGGGGCGGTGCCGAGGAAGCTGGTCGTCTGGTGCAGCGCCGACGCGGCCATTTCGCTGGTGGCTGGGGCTGCCTGCGAGCTCA
GTGAGATGAACTGGTGGATGGTGTGTG