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Detailed information on CNT30685178

BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QVG9|CLPC2_ORYSJ, E-value = 7e-143

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693027	Triticum urartu	Oryza sativa	26.85	24.22	81.65	218	forward
CNT30300179	Triticum urartu	Triticum aestivum	95.57	66.5	98.2	776	forward
CNT30393350	Triticum urartu	Triticum turgidum	57.39	46.55	100	466	forward
CNT30144776	Triticum urartu	Medicago truncatula	27.59	17.06	82.59	224	forward
CNT30441093	Triticum urartu	Aegilops tauschii	19.58	31.3	98.11	159	forward
CNT30254596	Triticum urartu	Avena sativa	28.69	17.57	80.69	233	forward
CNT30658759	Triticum urartu	Triticum dicoccoides	15.89	21.79	84.5	129	forward
CNT30311914	Triticum urartu	Camelina sativa	39.41	51.78	80.94	320	forward
CNT3062430	Triticum urartu	Arabidopsis lyrata	33.25	23.42	80.37	270	forward
CNT30328300	Triticum urartu	Asparagus officinalis	17.24	46.98	81.43	140	forward
CNT30150466	Triticum urartu	Brachypodium distachyon	17.98	43.07	82.19	146	forward
CNT30581271	Triticum urartu	Echinochloa crusgalli	28.82	44.15	83.33	234	forward
CNT30116632	Triticum urartu	Oryza nivara	28.33	60.05	82.61	230	forward

Expression of CNT30685178

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MTFPSGSTSTMTESPSLTSPPKIFSARLSSRSLMMALLSGRAP*

>peptide 2 (43 aa)
MSAISLTSSLVSCLKTIISSRRLRNSGRKYCFISSITKLLILP*

>peptide 3 (36 aa)
MLNTSGCAFSISSKSTTLYGRRRTASVSCPPSVYPT*

>peptide 4 (33 aa)
MAAVEPPPSAAHLQCIPHSLVVNRSTWTQCASP*

>peptide 5 (34 aa)
MCLLNLIKKHNAVWPPSNRLRQLPTFSVSHIAWW*

Sequence

>CNT30685178
ACCTGACTGCCGCACCTATGAAGAGATATGTGCTGGAAGGAAATGAAAACGCTGTATTGTATATATATGCTTAACAATCTTCTACGTATTCTATACAGTA
CCAACAACTAAACAGCGACCGCCGGGGTTGGAAGCTCCGGCAGTCCGCTCTCGCCATTCAGCACAATGACTTTCCCCTCCGGGTCCACATCAACGATGAC
AGAGTCGCCCTCCTTGACCTCCCCGCCCAAAATCTTCTCCGCGAGGCTGTCCTCCAGGAGCCTCATGATGGCCCTCCTCAGCGGCCGCGCTCCGTAGCTA
GGGTTGTACCCTTCGTCCACGACCCGCTCCTTGAACTTCTCCGTCACCTGCAGCATTATGTCCGCGATCTCTTTGACTTCCAGCTTGGTCAGCTGTCTGA
AGACGATCATCTCGTCCAGACGGTTGAGAAACTCTGGTCGGAAGTACTGCTTCATCTCCTCGATCACCAAGCTCTTGATCCTGCCATAGCTGCTGTCCTT
CTCGTCCGAGTCGAGGTCGAACCCGATCTTCCTCCCCCCCTTCTCAATCACGCTGCTCCCAACATTTGATGTCATTATCAGGAGCGTGTTCTTGAAGTCC
ACTGTTCTCCCCTTGCTGTCGGTTAACCTTCCGTCTTCCAGGATCTGGAGCATCATGTTGAACACATCCGGATGTGCCTTCTCAATCTCATCAAAAAGCA
CAACGCTGTATGGCCGCCGTCGAACCGCCTCCGTCAGCTGCCCACCTTCAGTGTATCCCACATAGCCTGGTGGTGAACCGATCAACTTGGACACAGTGTG
CCTCTCCATGAA