Detailed information on CNT30685087


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QVG9|CLPC2_ORYSJ, E-value = 3e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272384Triticum urartuChenopodium quinoa55.9127.8883.56298forward
CNT30404760Triticum urartuBeta vulgaris55.3533.9580.68295forward
CNT30709232Triticum urartuGlycine max56.4740.3585.05301forward
CNT3017684Triticum urartuZea mays38.0949.2788.67203forward
CNT3053264Triticum urartuAmborella trichopoda36.7731.3183.16196forward
CNT3037990Triticum urartuCucumis melo29.4652.6880.25157forward

Expression of CNT30685087

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SPSLTSPPKIFSARLSSRSLMMALLSGRAP*

>peptide 2 (86 aa)
VALLDLPAQNLLREAVLQEPHDGPPQRPRSVARVVPFVHDPLLELLRHLQVDVLALDPAIAAVLLVRVEVEPDLPPPLLNHAAPNI*

>peptide 3 (36 aa)
MLNTSGCAFSISSKSTTLYGRRRTASVSCPPSVYPT*

>peptide 4 (34 aa)
MCLLNLIKKHNAVWPPSNRLRQLPTFSVSHIAWW*

>peptide 5 (33 aa)
MAAVEPPPSAAHLQCIPHSLVVNRSTWTQCASP*

Sequence

>CNT30685087
GTCGCCCTCCTTGACCTCCCCGCCCAAAATCTTCTCCGCGAGGCTGTCCTCCAGGAGCCTCATGATGGCCCTCCTCAGCGGCCGCGCTCCGTAGCTAGGG
TTGTACCCTTCGTCCACGACCCGCTCCTTGAACTTCTCCGTCACCTGCAGGTTGATGTCCTTGCTCTTGATCCTGCCATAGCTGCTGTCCTTCTCGTCCG
AGTCGAGGTCGAACCCGATCTTCCTCCCCCCCTTCTCAATCACGCTGCTCCCAACATTTGATGTCATTATCAGGAGCGTGTTCTTGAAGTCCACTGTTCT
CCCCTTGCTGTCGGTTAACCTTCCGTCTTCCAGGATCTGGAGCATCATGTTGAACACATCCGGATGTGCCTTCTCAATCTCATCAAAAAGCACAACGCTG
TATGGCCGCCGTCGAACCGCCTCCGTCAGCTGCCCACCTTCAGTGTATCCCACATAGCCTGGTGGTGAACCGATCAACTTGGACACAGTGTGCCTCTCCA
TGAACTCACTCATATCCAGCCGGATCATGGCTT