CANTATAdb - search

Detailed information on CNT30684912

BLAST search results

BLAST vs Swiss-Prot:
sp|P13192|PSAF_HORVU, E-value = 6e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30394054	Triticum urartu	Triticum turgidum	29.9	18.2	100	180	forward
CNT30664472	Triticum urartu	Triticum dicoccoides	72.43	77.44	94.72	436	forward

Expression of CNT30684912

Peptides detected in this lncRNA

>peptide 1 (29 aa)
AMALSTLIQTWVQSSPELGPTSQPRTHGR*

>peptide 2 (31 aa)
MKPLGMILAASSTSMMISLMAGFFSPLTAMR*

>peptide 3 (97 aa)
MVAWMASAGAESGAYFLSDELSFFTDCFSRLANALDSLHGVRPAMSAAAGGGEVAAEERRTEESARAAEKVLMEAVRAAIARGRAGVWRGLIRDRWRV

Sequence

>CNT30684912
AGCCATGGCTTTGAGCACATTAATTCAGACATGGGTGCAGAGCTCACCTGAGTTGGGACCGACTAGCCAACCACGCACGCATGGCCGCTGATTAGTAGCC
GATGTCGGCGTCGTCGACGACGAGGTCGCCGTTGATGAGCTCGCGGTAGGCGGCGACGGGCCAGATGAAGCCCCTGGGGATGATCCTGGCGGCGAGCTCG
ACGTCGATGATGATCTCCCTCATGGCGGGCTTCTTCTCGCCGCTGACGGCGATGAGGTAGCTGCGGCCGAACTTGCCGTAGTTCTCAAACCGGCGCTTGG
TCTTCTCGATGGTGGCCTGGATGGCGAGCGCGGGGGCCGAGTCGGGCGCGTACTTCTTGAGCGACGAGTTGAGCTTCTTCACCGACTGCTTCTCCCGCTT
GGCGAACGCCTTGGACTCCTTGCACGGGGTCAGGCCCGCGATGTCGGCGGCAGCCGGCGGCGGGGAGGTGGCGGCGGAGGAGAGGAGGACGGAGGAGAGC
GCCAGGGCCGCCGAGAAGGTCTTGATGGAGGCGGTGAGGGCGGCCATTGCTCGCGGGCGGGCGGGCGTGTGGAGGGGTTTGATTCGTGATCGTTGGAGGG
TG