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Detailed information on CNT30684877


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU35|ERLL1_ARATH, E-value = 7e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692405Triticum urartuOryza sativa14.5132.8691.392forward
CNT30284035Triticum urartuTriticum aestivum13.0926.3585.5483forward
CNT30552993Triticum urartuOryza glaberrima26.3429.386.83167forward
CNT30439196Triticum urartuAegilops tauschii34.0752.6896.76216forward
CNT30447822Triticum urartuSaccharum spontaneum36.4434.1283.12231forward
CNT30367039Triticum urartuSorghum bicolor26.3428.5585.63167forward
CNT30596850Triticum urartuOryza meridionalis14.5120.6391.392forward
CNT30369831Triticum urartuOryza glumipatula26.3427.2486.83167forward
CNT30105280Triticum urartuOryza longistaminata26.3426.7688.02167forward
CNT30100768Triticum urartuOryza rufipogon34.5431.287.67219forward
CNT30575695Triticum urartuOryza barthii26.3426.386.83167forward
CNT30116147Triticum urartuOryza nivara23.0329.5588.36146forward

Expression of CNT30684877

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MRACMHVRTYSGCLHAVDDGSLGSSLLAGALEAGGDVLAAVVDEEAEDVGLERRAEAHRRLQVGEPLD*

>peptide 2 (88 aa)
MLALSAVQRHTAASRSASPWISEQHGCFGGVPSCRLISPLSTLAHTPSFSVSMGHRARPPDPPPPDPPPPDPPPPLPPPPDPPPPLPPP

>peptide 3 (30 aa)
MPACSGRWISRVFSSSGGTGSRRGRSCRSS*

>peptide 4 (30 aa)
MKQITYTTSYRALVNGWIVDHACVHARTYV*

>peptide 5 (31 aa)
MDCRSCVRACTYVRIVDACMQWTMDLSGLLF*

>peptide 6 (54 aa)
SGTRMRSYVAENWIHGPYSTVTSSMTSSTWYKRYYHTHTEKYASLATSKSDDKL*

Sequence

>CNT30684877
CAGCGGTACACGCATGAGATCATATGTGGCTGAGAACTGGATCCATGGTCCATACAGTACCGTAACCAGTTCGATGACAAGCAGTACGTGGTACAAACGG
TACTACCACACACACACAGAGAAATATGCAAGTTTAGCAACTAGCAAGAGCGATGATAAATTATGAAGCAAATAACGTATACGACTAGCTATAGAGCACT
AGTCAATGGATGGATTGTAGATCATGCGTGCGTGCATGCACGTACGTACGTATAGTGGATGCCTGCATGCAGTGGACGATGGATCTCTCGGGTCTTCTCT
TCTAGCGGGGGCACTGGAAGCCGGAGGGGACGTTCTTGCCGCAGTAGTTGACGAGGAGGCTGAGGATGTTGGCCTTGAGCGCCGTGCAGAGGCACACCGC
CGCCTCCAGGTCGGCGAGCCCCTGGATTAGCGAGCAGCACGGCTGCTTCGGCGGCGTCCCCAGCTGCAGGTTGATCAGCCCGTTGAGCACGTTGGCGCAC
ACCCCCAGCTTCAGCGTGTCGATGGGGCACCGCGCGCGCCCGCCTGATCCGCCTCCTCCCGATCCGCCACCGCCGGACCCGCCGCCGCCGCTGCCACCTC
CTCCTGACCCACCTCCGCCGCTGCCACCTCCTCC