Detailed information on CNT30684712


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG85|UBI1P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693916Triticum urartuOryza sativa44.7876.7687.611146forward
CNT30641270Triticum urartuNymphaea colorata44.5157.0484.91139forward
CNT30528977Triticum urartuEucalyptus grandis35.2567.3189.36902forward
CNT30226205Triticum urartuHordeum vulgare37.8393.891.01968forward
CNT30553671Triticum urartuOryza glaberrima35.5678.2587.8910forward
CNT30461176Triticum urartuSaccharum spontaneum35.6426.7589.69912forward
CNT307928Triticum urartuZea mays35.8376.9388.44917forward
CNT30596296Triticum urartuOryza meridionalis44.7883.2288.131146forward
CNT30116770Triticum urartuOryza nivara44.7881.9787.611146forward

Expression of CNT30684712

Peptides detected in this lncRNA

>peptide 1 (30 aa)
KNRHTFRAHLFIQVHPNLLQHSIKFRHSQI*

>peptide 2 (31 aa)
MIFRQELMHKYRYLQVLTQQDTISVKSTVLL*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWIFALTLSMVSEDSTSKVMVLPVRVLTKICMPPLRRSTRWRVDSFWML*

>peptide 4 (61 aa)
MRRCWSGGMPSLSWIFALTLSMVSEDSTSKVMVLPVRVLTKICMPPLRRSTRWRVDSFWML*

>peptide 5 (39 aa)
MFKFDHKLKRSVNIYDFQTRTDAQVQIPSSFDTTRYNIS*

>peptide 6 (68 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPVRVFTKICICKHKVYQNHNKALVIMKLQNIKHI*

>peptide 7 (62 aa)
KKQAHVQGSFIHSSSSKSAAAQHKVQTQPDITLDHSTVATKNKTRRGHADNHNGVHRKTTDS*

>peptide 8 (62 aa)
MARHLLATTEAEHQVKGGLLLDVVVRQSAAILKLLTSKDEALLVWWDTLLVLDLRLHIVDGV*

>peptide 9 (61 aa)
MRRCWSGGIPSLSWIFAFTLSMVSEDSTSSVIVLPVRVFTKICIPPLRRSTRWRVDSFWML*

>peptide 10 (87 aa)
MQLRYIRSQIKHRCNIKRLMSATKSERLSRNLAESINHTRLDEHNQHQHQLRLKSADLPDNPGITVRDFTTTEPNQQQSINKPIVSN*

>peptide 11 (61 aa)
MRRCWSGGMPSLSWIFALTLSMVSEDSTSKVMVLPVRVLTKICIPPLRRSTRWRVDSFWML*

>peptide 12 (61 aa)
MRRCWSGGMPSLSWIFALTLSMVSEDSTSKVMVLPVRVLTKICMPPLRRSTRWRVDSFWML*

Sequence

>CNT30684712
AAAAAAACAGGCACACGTTCAGGGCTCATTTATTCATTCAAGTTCATCCAAATCTGCTGCAGCACAGCATAAAGTTCAGACACAGCCAGATATAACGCTA
GACCACAGCACGGTAGCAACAAAGAACAAGACCAGACGAGGACACGCTGACAATCACAACGGAGTACACAGAAAGACAACCGACTCGTGAGCCCAGAGAC
ATAAGCAGCTCCATGGCCAGGCACTTACTGGCCACCACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGG
CCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTG
AAGACTCGACCTCGAGCGTGATTGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATACCACCCCTGAGACGGAGCACCAGGTGGAGGGTGGACTCCTT
CTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATC
TTCGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATACCACCCCTGAGGC
GGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTC
CGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCTGAAGACTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTG
ACGAAGATCTGCATGCCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCT
TGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCTGAAGACTCGACCTCCAA
GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGCCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA
GCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGT
CGATGGTGTCTGAAGACTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGCCACCCCTGAGGCGGAGCACCAGGTGGAG
GGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCC
TTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCT
GCAAACATAAAGTGTACCAAAACCATAATAAGGCACTCGTAATCATGAAACTGCAGAACATAAAGCATATATGAACCAGAAGGCCATGATCCAAGAGAGA
CGAAATTGTAACTATGTCTTGAACTATTAGATAGCAGATTGATGTTCAAGTTTGACCACAAGCTAAAAAGATCAGTTAATATATATGATTTTCAGACAAG
AACTGATGCACAAGTACAGATACCTTCAAGTTTTGACACAACAAGATACAATATCAGTTAAATCAACAGTACTACTGTAAGCAAACACAATTGACTCTTA
AGAGCAGAACCGGTGCACAAGAACGGATCCTCCAAACAACTACTAGGCCCAACAACTAACATAGGAACCAGTTTTGCTAAAGCACATCTAGGTGTGCCCA
AGTATGCAACTCAGGTATATCCGTTCACAGATCAAGCATAGGTGCAACATAAAAAGGCTCATGAGCGCCACAAAGTCTGAGCGACTCAGCAGGAACCTAG
CGGAATCAATCAACCACACACGCCTAGATGAACATAATCAACATCAACATCAGTTGCGTCTCAAATCGGCAGATCTACCCGATAATCCAGGCATAACCGT
GAGGGATTTCACGACAACGGAGCCAAATCAACAGCAATCGATCAACAAACCTATCGTCTCGAACTAGTACTGCTAACACGGAACGAGCGGATCAACTAGA
ACACCTCTAATCGGCAGATCTACCGGATAATCCAAATCGAGAGGGATTTCGCGACAACCGACTACGGGGCAGATCAACAGCAACATAATCAACGATAATA
GCGAGGGGCGCGGTCTGAAATTCACGTACCTTGGAGGTGGGCGAGAAGGCCTTGGCTTCGATTCGATCGGAAACTTTCTTGGGGTCGCTTGGCAGGGAGG
ATTGGATGAGTGGAGGAGGAGACGGGAGGGGAGGGGGATTTAAAGGGGGAAGAGTCCCG