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Detailed information on CNT30684701


BLAST search results

BLAST vs Swiss-Prot:
sp|A4GYN8|RR12B_POPTR, E-value = 2e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201818Triticum urartuPisum sativum42.5514.3191.88197forward
CNT30228329Triticum urartuAnanas comosus44.0698.5591.18204forward

Expression of CNT30684701

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MIKGEDCSFTKHMQIKSRLIIRRNLSRYQSPCPSFFENQKDPFRVSISSF

>peptide 2 (38 aa)
MRFSPHTAPRSILSKGSFSSFESLRPSSTPSRRLTKTN*

Sequence

>CNT30684701
TATGGCCAATACTAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGAT
AGTGGAAAAGTCGACAGATAAGTCACCCTTACTTTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGG
ATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCATCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTT
TCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAAT
CCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTG