CANTATAdb - search

Detailed information on CNT30684652

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBU3|PSBA_LOTJA, E-value = 2e-127

BLAST vs NONCODE:
NONMTRT000175, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3021612	Triticum urartu	Citrullus lanatus	12.42	47.29	97.92	96	forward
CNT3095573	Triticum urartu	Solanum tuberosum	11.51	22.03	88.76	89	forward
CNT3059907	Triticum urartu	Arabidopsis lyrata	26.65	40.47	89.32	206	forward
CNT3067750	Triticum urartu	Leersia perrieri	33.51	97	96.91	259	forward
CNT30484609	Triticum urartu	Chara braunii	15.91	31.3	85.37	123	forward
CNT3058324	Triticum urartu	Amborella trichopoda	73.61	82.46	87.35	569	forward

Expression of CNT30684652

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MWNGCIRMLCSAWNTIIKLKVPEIPKGIPSEKLP*

Sequence

>CNT30684652
TTCAAAAATTCTTATATGTTAGCAGAAAACCTTATCCATTAATAGATGGAACTTCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTG
CATTACTTCCATACCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTTGAAAGCCATAGAA
CCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCA
TAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGG
AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGA
ACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGGA
TAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGAT
AATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTT