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Detailed information on CNT30684618


BLAST search results

BLAST vs Swiss-Prot:
sp|Q95H48|RK22_WHEAT, E-value = 4e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676816Triticum urartuSetaria viridis6.427.696.7261reverse complement
CNT30304119Triticum urartuTriticum aestivum33.6891.7197.2321forward
CNT30220592Triticum urartuHordeum vulgare25.8110097.97246forward
CNT30590093Triticum urartuMusa acuminata13.9621.7786.47133forward
CNT30447572Triticum urartuSaccharum spontaneum52.0528.8293.55496forward
CNT3018340Triticum urartuZea mays44.2831.6889.81422forward
CNT30649878Triticum urartuRosa chinensis6.7229.2292.1964forward
CNT30720298Triticum urartuTriticum spelta17.9477.3898.25171reverse complement
CNT30349424Triticum urartuEragrostis tef37.6782.1593.59359forward
CNT30415027Triticum urartuPapaver somniferum15.2237.1885.52145forward

Expression of CNT30684618

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MKSYKRICFFRVTADYSFFSFLKSGILCPISRSKYGGQNK*

>peptide 2 (49 aa)
FYGETTSLSSKSEFLHNSTPTNFGFSNKYTRFVEIPIMSSICGCRINQL*

>peptide 3 (38 aa)
MPSRHEFPQFATYHRICYVNRYMFLSIMNRDCMANHCG*

Sequence

>CNT30684618
TTTTTATGGGGAAACTACGTCCTTGAGCTCGAAGTCTGAATTTCTTCATAATAGTACTCCTACTAACTTTGGCTTTAGTAATAAATACACTCGCTTTGTC
GAAATCCCTATAATGAGTAGCATTTGCGGCTGCCGAATAAACCAACTTTAAGATGGGATAAGATGCTCGATAGGGCATGATGTTTAGTATCATAACAGTT
TCCTCGTAGTAACGCCAGCAAATCTCGTCAAGAACTCTTTGTGCTTTGAAAACTGACATAGGGATACGTTTTTGTGCTTTGAAAACTCTCTCGAACTTAA
GTAGATGATCGGTTGGAACTTTCCTTGCGAGTTTCCTTGGCCCACTTTTCTTCTTCTTTATCCTAGGGATATACTTTACTAGTTTGAAACTTGTCATAAA
TAAGGTTATTCCCCGCCTACCTTTACTTTATTTTGAATCTTTTTTTCTTCTTAATCTTTCTATTCAGAATTTAGTTAACGACGAGTTTTAGTATCCTTTC
TTGCATTTTCATAACTCGTGAAATGCCGAGTAGGCACGAATTCCCCCAATTTGCGACCTACCATAGGATTTGTTATGTAAATAGGTATATGTTCCTTTCC
ATTATGAATCGCGATTGTATGGCCAACCATTGTGGGTAGAATGCTAGATGCCCGGGACCACGTTACTATTGTTTCTTTCTCCTCCTTCATATTGACCTTT
TCTATCTTTGCCAATAAATGAAGAGCTACAAAAGGATTTGTTTTTTTCGTGTAACAGCTGATTACTCCTTTTTTTCCTTTTTAAAGAGTGGCATTCTATG
TCCAATATCTCGATCGAAGTACGGAGGTCAGAATAAATAGAATAATGATCAATGGAAAAAAGAAAAAAAATCCTTAGCTGGATAAGGGGCGGATGTAGCC
AAGTGGATCAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCCG