Detailed information on CNT30684612


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 7e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224976Triticum urartuHordeum vulgare54.5265.7296.42531forward
CNT30393324Triticum urartuTriticum turgidum100.2192.6998.57976forward
CNT30665119Triticum urartuTriticum dicoccoides86.34103.9694.17841forward
CNT30151009Triticum urartuBrachypodium distachyon34.0964.8490.66332forward
CNT30115461Triticum urartuOryza nivara33.0647.5684.47322forward

Expression of CNT30684612

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MYTLTDYNSSSAHIRWSSRLNCVLIDVGI*

>peptide 2 (90 aa)
KTYIVDILYNITRPCIYIATDSIHIRACFLEPCWYMNMDIHIFLGTNKKDKWRRKTQSNVRVDKTAMALYIWPVVSELFRPCRTPRSPVA*

>peptide 3 (62 aa)
MLFTCMHLILPPLLTLPRLAPLERRLTGRPAVDLSPWKGATEVADEAITVGAMAVLCRYIAC*

>peptide 4 (45 aa)
MLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

>peptide 5 (34 aa)
MNPTLLNSRQGTHLERIRVSNFLMPSMGHTCKSD*

Sequence

>CNT30684612
AAAACGTATATAGTTGACATATTGTATAATATTACGCGTCCGTGCATATACATAGCCACCGATAGCATTCACATACGAGCATGCTTTCTCGAGCCATGTT
GGTACATGAACATGGACATACACATATTCTTAGGAACAAATAAGAAAGATAAATGGAGAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAAACTGCAAT
GGCACTTTATATATGGCCTGTCGTGAGTGAGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCT
GACGCATGTTGTCGAATCCGATGATGCGGACATACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGTGTGGCGTCAGTGCACCC
AAACATAGGCAGCTTCCACATTGTCCAGTACCGGCCATCGTAGTACCCAGGAGATGCGTTGTGCTCACGGAAGATGAACCCAACCTTGCTGAACTCGAGG
CAAGGCACCCACTTGGAGCGGATCAGGGTCTCGAACTTCTTGATGCCCTCGATGGGCCACACCTGCAAATCAGATTGACAGTCATGTATACATTAACAGA
CTATAACTCTAGTTCTGCACATATCAGATGGAGTAGCCGGCTAAATTGTGTGCTGATTGACGTCGGGATTTGAAACTATTGTATGTAATTGACCATATGA
AAGTTCACATATGATTGTTATTGTCTTCCGTGAGGTAGAAAATGAGTAGAAAACAGAGACGATGTTGTTTACCTGCATGCACCTGATCCTTCCACCGTTG
CTGACGCTGCCGAGGCTAGCGCCGTTGGAGCGGCGGCTGACGGGGAGGCCGGCGGTGGACTTGAGCCCCTGGAAAGGAGCGACGGAGGTGGCCGACGAGG
CCATCACGGTGGGGGCCATGGCTGTACTATGTAGGTATATAGCTTGCTAGGAGGAGGCACTCTGGCTTGAGGAC