« Back to Triticum urartu search


Detailed information on CNT30684606


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 4e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30300848Triticum urartuTriticum aestivum82.7398.4196.6618forward
CNT30721860Triticum urartuTriticum spelta62.7881.7198.72469forward
CNT30351769Triticum urartuEragrostis tef45.1139.7981.9337forward

Expression of CNT30684606

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

>peptide 2 (79 aa)
MCMCIYIATDCIHIRACFLEPCWYMNMDIHIFLGTNKKDKWRRKTQSNVRVDKTAMALYMWPVVSELFRPCRTPRSPVA*

Sequence

>CNT30684606
AATAAAAGATGCGCGTGCCGTGCCAAAGATGTTTCTCATTATTAATTACCCGAATACATAGTCGACAGATTGTATAAATATATTATGTGCATGTGCATAT
ACATAGCCACCGATTGCATTCACATACGAGCATGCTTTCTCGAGCCATGTTGGTACATGAACATGGACATACACATATTCTTAGGAACAAACAAGAAAGA
TAAATGGAGAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAAACCGCAATGGCACTTTATATGTGGCCCGTGGTGAGTGAGCTGTTTAGGCCTTGCCGG
ACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACATACGCGTCAGGGTACTC
CTTCTTGACCTCCTCCACCTCGTTGATCACCTGTGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTACCGGCCATCGTAGTACCCA
GGGGATGCGTTGTGCTCACGGAAGATGAACCCAACCTTGCTGAACTCGAGGCAAGGCACCCATTTGGAGCGGATCAGGTAATCGACCTGCTTGAGGAGGG
CCTCCGTGCTGAGCGGTGGCAGGTAGGACAGGGTCTCGAACTTCTTGATGCCGGCGGTGGCCGACGAGGCCATCACGGTGGGGGCCATGGCTGTGCTATG
TAGGTATATAGCTTGCTAGGAGGAGGCACTCTGGCTTGAGGACTGCT