Detailed information on CNT3068454


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENE2|RPOA_ORYNI, E-value = 2e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Leersia perrieriOryza sativa92.3613.5996.13568forward
CNT30550215Leersia perrieriIpomoea triloba44.395.9683.52273forward
CNT30618863Leersia perrieriSesamum indicum26.993.5385.54166forward
CNT30226930Leersia perrieriHordeum vulgare8.7820.1588.8954forward
CNT30228020Leersia perrieriAnanas comosus77.0734.2788.61474forward
CNT30205112Leersia perrieriHelianthus annuus26.1860.5382.61161forward
CNT30689031Leersia perrieriTriticum urartu91.3810.0894.13562forward
CNT3059025Leersia perrieriAmborella trichopoda40.4920.6687.15249forward
CNT30585636Leersia perrieriEchinochloa crusgalli60.986.5392.53375forward
CNT30114068Leersia perrieriFicus carica25.377.3984.62156forward

Expression of CNT3068454

Peptides detected in this lncRNA

>peptide 1 (33 aa)
WSSRPRSELLFRITSILSVLSDFRVISTISLDL*

Sequence

>CNT3068454
GTGGAGCAGCAGGCCCAGATCTGAGCTTCTTTTCCGGATAACTTCCATCTTGAGCGTTCTTTCTGACTTCCGTGTGATATCCACGATCTCTCTTGATCTG
TAACTCAATACGGAAATCCATGGGTTCTGTCAAGTTAGCTATAGGTTGTGCTGTATCAACGATTTCTACGGAAGGTGGTAAGATAATATCTTGAGCGGTT
ATGTATCTGGGACCTTTGACGCAAATTGACGCGTCTCTAACTCCATAGAGATTACTTCTCAATACAATTTCTTTCAAATTTAGTAAAATTTCTTGTACTG
ATTCTTCAATACCTGCTATTGTAGAATATTCGTGTGGCACGCTTCCAAATTTTGCATGTGTGATACATGTTCCTTCTGTTTCTCCAAGTAAAGCTCTTCG
CAAGGCAATACCAACGGTATCCGCTTGACCTTTTCTAAGCGGGGACAGAATGAAACGACCATAATAAAGACGCTTATTATCTGCTCTTGATTCAACACAC
TTCCACTGTAGTGTTTGAGTGGACCATGCTACCTCCCCTCGAACCATATAGACTAGTATTATTATTTGATCATTGAACCGTTTATTTCTCTTGAAAGGGG
TTTCTCTTCTGTCAT