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Detailed information on CNT30684524


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 3e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520889Triticum urartuSetaria italica16.121.3287.74155forward
CNT30555728Triticum urartuOryza glaberrima31.3650.6785.1302forward
CNT30597191Triticum urartuOryza meridionalis14.0246.5594.07135forward
CNT30557030Triticum urartuPanicum hallii28.9770.4583.15279forward

Expression of CNT30684524

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

>peptide 2 (57 aa)
MHLILPPLLTLPRLAPLERRLTGRPAVDLSPWKGATEVADEAITVGAMAVLCRYIAC*

>peptide 3 (70 aa)
MCMCIYIATDCIHIRACFLEPCWYMNMDIHIFLGTNKKDKWRRKTQSNVRVDKTAMALYMWPVVSELFRR*

>peptide 4 (29 aa)
MYTLTDYNSSSAHIRWSSRLNCVLIDVGI*

Sequence

>CNT30684524
AAAGATGTTTCTCATTATTAATTACCCGAATACATAGTCGACAGATTGTATAAATATATTATGTGCATGTGCATATACATAGCCACCGATTGCATTCACA
TACGAGCATGCTTTCTCGAGCCATGTTGGTACATGAACATGGACATACACATATTCTTAGGAACAAACAAGAAAGATAAATGGAGAAGGAAAACCCAAAG
CAATGTCAGAGTTGACAAAACCGCAATGGCACTTTATATGTGGCCCGTGGTGAGTGAGCTGTTTAGGCGATGAAGCTGACGCACTGCACCTGGCGCATGT
TGTCGAATCCGATGATGCGGACATACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGTGTGGCGTCGGTGCACCCGAACATAGG
CAGCTTCCACATTGTCCAGTACCGGCCATCGTAGTACCCAGGGGATGCGTTGTGCTCACGGAAGATGAACCCAACCTTGCTGAACTCGAGGAGGGCCTCC
GTGCTGAGCGGTGGCAGGTAGGACAGGGTCTCGAACTTCTTGATGCCCTCGATGGGCCACACCTGCAAATCAGATTGACAGTCATGTATACATTAACAGA
CTATAACTCTAGTTCTGCACATATCAGATGGAGTAGCCGGCTAAATTGTGTGCTGATTGACGTCGGGATTTGAAACTATTGTATGTAATTGACCATATGA
AAGTTCACATATGATTGTTATTGTCTTCCGTGAGGTAGAAAATGAGTAGAAAACAGAGACGATGTAGTTTACCTGCATGCACCTGATCCTTCCACCGTTG
CTGACGCTGCCGAGGCTAGCGCCGTTGGAGCGGCGGCTGACGGGGAGGCCGGCGGTGGACTTGAGCCCCTGGAAAGGAGCGACGGAGGTGGCCGACGAGG
CCATCACGGTGGGGGCCATGGCTGTGCTATGTAGGTATATAGCTTGCTAGGAGGAGGCACTCT