Detailed information on CNT30684486


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36718|CB120_HORVU, E-value = 4e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695632Triticum urartuOryza sativa53.7412.3594.78115forward
CNT30564637Triticum urartuActinidia chinensis33.186.2385.9271forward
CNT30554731Triticum urartuOryza glaberrima53.748.0394.78115forward
CNT30138628Triticum urartuLolium perenne40.1918.2693.0286forward
CNT30596737Triticum urartuOryza meridionalis35.5112.597.3776forward
CNT30370946Triticum urartuOryza glumipatula53.749.394.78115forward
CNT30102887Triticum urartuOryza rufipogon53.7413.7294.78115forward
CNT30577292Triticum urartuOryza barthii53.7410.3694.78115forward
CNT30604528Triticum urartuOryza punctata53.7410.0790.43115forward

Expression of CNT30684486

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGSPCRRRTTRARSAAPPWSAPPGSASPPPPASPT

>peptide 2 (70 aa)
GELLLLVLEGGGEVEGVEDAAGIAALVGREAVALEDGVSLPASYHSGAFSSPALVSTSGISIPATPSIAHR

Sequence

>CNT30684486
TGGCGAGCTCCTTCTCCTTGTTCTCGAGGGTGGGGGCGAAGTTGAGGGGGTTGAAGACGCTGCCGGGATAGCCGCACTCGTGGGGCGGGAGGCTGTAGCT
CTTGAAGATGGGGTCTCCTTGCCGGCGTCGTACCACTCGGGCGCGTTCAGCAGCCCCGCCTTGGTCAGCACCTCCGGGATCAGCATCCCCGCCACCCCCA
GCATCGCCCACCGC