Detailed information on CNT30684393


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553208Triticum urartuOryza glaberrima30.8434.1890.29309forward
CNT30147849Triticum urartuBrachypodium distachyon30.8470.0792.88309forward

Expression of CNT30684393

Peptides detected in this lncRNA

>peptide 1 (83 aa)
LGEKIEMKTDEYSYASRNISSAHSTCYRTGSWHLLPSLLRQVKIDAVKIQRRKYGVDPVRTRGPVKPAGSGSNFFSLFAFFWC*

>peptide 2 (53 aa)
MPSTPRRSVLNTLWQTCSEMSGRMLNSVRLNSCTAAGTSAPTASGAYPLAHAS*

>peptide 3 (78 aa)
MRYGSTRLHADWSVPKPCDSTTTRSPVPTTRTFRICSSFAPLGAPPTIASPELDAGAGLLPPLPPPPLLLLLLGLRGCV

>peptide 4 (29 aa)
MSTRTPREIFRVLIVRATGQAPGIFFRVF*

Sequence

>CNT30684393
TTCTCGGCGAAAAGATAGAGATGAAAACTGATGAGTACTCGTACGCCTCGAGAAATATTTCGAGTGCTCATAGTACGTGCTACAGGACAGGCTCCTGGCA
TCTTCTTCCGAGTCTTTTGAGGCAAGTAAAAATCGATGCGGTAAAAATACAGAGAAGAAAATACGGGGTAGACCCCGTACGTACGCGCGGGCCGGTGAAA
CCAGCAGGCAGCGGCAGTAATTTCTTCTCTCTCTTTGCTTTTTTCTGGTGCTAGAACCGGGCGAGCGCGCGGCGGAGCACCTGGGCGAGGAGGCTGGGGG
CGCTGAGGTGGGGGAGGTGGCCCTCCGTCGGCAGGGGCTCGATGGTGGTGCGCCCGCCGAGGTGGGCCCTGAGGTAGGCGGCGACGTTGGCCGGCACGGA
GACGTCGCGGGTGGTCTGCACCACCACGCAGGGGGCCTGCACCATGCCCAGCACGCCGCGGAGGTCCGTCTTGAACACGCTCTGGCAGACGTGCAGCGAG
ATGTCCGGCCGCATGTTGAACAGCGTCCGGCTGAACTCCTGCACCGCCGCCGGCACGTCCGCGCCCACCGCCAGCGGCGCGTACCCCTTGGCCCACGCCT
CGTAGTTGGCCGACATCGCCTGGAACACCTGCTGGATCTCCTCCAGCTCGAACCCGCCGCGCCGATGAGGACGAGCTTGGCGAAGAGGTCGGGGCGGCGG
ATGGAGGCGAGGATGCCGATCATGGCGGAGACGGAGTCGTAGAGCACCACGCGGTGCTCGCGGATGAGGTACGGCAGCACGCGGCTCCACGCCGACTGGT
CCGTGCCGAAGCCGTGCGACAGCACCACCACGCGCTCGCCGGTGCCCACCACCCGCACGTTCAGGATCTGCAGCAGCTTCGCCCCGCTCGGCGCGCCCCC
CACCATCGCCTCGCCGGAGCTGGACGCCGGGGCCGGGCTGCTACCTCCGCTGCCGCCGCCGCCGCTGCTGCTGCTGCTGCTGGGGCTGAGGGGATGCGTG
GA