Detailed information on CNT3068416


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000009, E-value = 7e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696975Leersia perrieriOryza sativa15.5492.3689.76254forward
CNT30675102Leersia perrieriSetaria viridis9.9165.0683.33162forward
CNT30523910Leersia perrieriSetaria italica5.4527.3887.6489reverse complement
CNT30554388Leersia perrieriOryza glaberrima9.0641.5785.14148reverse complement
CNT30110945Leersia perrieriOryza longistaminata14.524.9583.97237reverse complement
CNT30116366Leersia perrieriOryza nivara14.7574.6184.65241forward
CNT30556999Leersia perrieriPanicum hallii8.1424.1483.46133reverse complement

Expression of CNT3068416

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MRVSAADTRSKKFCLSQLHGHEEFGGAVWCDRVRRRWTHVVVWLHAAVR*

>peptide 2 (43 aa)
MPGHLSSEFPSLILPSCKWNLVMFVHPDLSPSYLSSLFNSCVC*

>peptide 3 (72 aa)
MEMERLLPLVAKNDLPMLLSSVGSSIVHQSHGSGKLRVSEEILVMDVQCGCMGRSSWLARVALIHHARPPLF*

>peptide 4 (29 aa)
MWLHGPVFLASQSGSHPPCQATSLLNFPA*

>peptide 5 (33 aa)
MLIWNITVCLVPIWIQIILHGTQFSERGKLDPV*

>peptide 6 (36 aa)
THFTHHTPSQGEPYLKIDQRKEEGSLTWRWRGYSLW*

>peptide 7 (40 aa)
MHSPAVCSLEPFLFLQLGARMYSGLMCKRDSVDLEFASLE*

Sequence

>CNT3068416
TACACACTTCACACACCACACACCAAGCCAAGGAGAGCCATATCTGAAGATTGATCAGAGAAAAGAAGAGGGGAGCCTTACATGGAGATGGAGAGGCTAC
TCCCTTTGGTAGCCAAGAATGACTTGCCTATGCTTTTGTCTTCTGTTGGCTCATCCATAGTCCATCAAAGCCATGGCAGTGGCAAATTAAGGGTTTCTGA
AGAAATTCTTGTGATGGATGTGCAATGTGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGCTCTCATCCACCATGCCAGGCCACCTCTCTTCTGA
ATTTCCCAGCCTAATTTTACCTTCCTGCAAATGGAATTTGGTAATGTTCGTTCATCCTGATCTCTCACCATCTTACCTTTCCTCTCTGTTCAATTCTTGT
GTATGTTGATATGGAACATTACCGTTTGTTTGGTGCCAATTTGGATTCAGATAATTCTGCATGGCACTCAATTCAGCGAACGGGGTAAGTTAGACCCTGT
CTGATCCTCCAACTTTTTTTTTTATAGTACCTGTCATATCGGATGTTTAGACACTAATTAGAAATATTAAATATAGACTATTAATAAAACCCACCCCATA
CTTTGGACTATTTCGTGAGACAAATTTATTGAGCCTAATTAGTCCACGATTAGCGAATGTGATGCTACAGTAAATATTTGCTAATCGTGGATTAATTAGG
TTTAAAAAATCGTCTCACGAATTAGCCTTTATTTATGAAATTAGTTTTATTATCAGTCTATATTTAATACTCATAATTAAGGTACAAATATCCGATGTGA
CACGAACTAAAAAAAATTCCCTGATCCAAACAACCTCTAAGCACGCAGTACCGAACTATCAGCTGAAATCTCTGAACTCTATCTTCCCCTCTGCACATTA
CAATTTCTTTTCGCAATAGGACAAAAAAATGCAATTCCACAGGCTGATTCTGCGAAGAAGATGAAAAAACTGTAATACTCCCTCCGTATTTTAATATATA
ACGTTTTTAACACTAATTTTAGTGTTAAAAAAGTCATATATTAATGGGCCGAGGGAGGAGTAATTAACTTCCACATTATATATACAGTACGCTTTTACTG
ATGCTGTCTGTAGAACAACATTACTACTAGGTGCAGATTTTGTCAGAGGCATGCGTGTATCAGCGGCAGACACAAGATCCAAGAAGTTTTGCCTGTCCCA
ACTGCACGGACACGAGGAGTTTGGAGGCGCCGTGTGGTGTGACCGTGTGAGGCGGCGGTGGACACACGTGGTGGTGTGGTTGCACGCGGCTGTCCGGTGA
CGTGCCGCATGCATTCGCCAGCGGTCTGCTCGCTAGAGCCTTTTCTTTTTCTACAACTGGGGGCTCGCATGTATAGTGGATTAATGTGCAAACGTGATAG
TGTGGACCTGGAGTTTGCCAGTTTGGAGTAGTTTTGCAAAGGATTAAGTCCGATTTACAACTGTGGTGGGGGGAGGGGGGGCTCGCATGTATATTATTTG
TTGTTTTATTAATTTTATTACCTTAAATATGTCAAAACTTGTTTTTTAGAGCGAAGTCAAAACTTAATGTTGGGTGACTTTTATATGGATTATTATTTAG
CACTTTGTAAACTGTTGATATTTCTCTTACCTAT