Detailed information on CNT30683958


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639906Triticum urartuNymphaea colorata27.6721.4883.12308forward
CNT3042646Triticum urartuPrunus dulcis34.2365.6983.46381forward
CNT30589303Triticum urartuMusa acuminata31.7248.0986.12353forward
CNT30241770Triticum urartuAvena sativa6.8325.9498.6876forward
CNT30596039Triticum urartuOryza meridionalis14.7362.696.34164forward
CNT30116140Triticum urartuOryza nivara33.0647.7395.65368forward

Expression of CNT30683958

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSTRTPREIFRVLIVRATGQAPGIFFRVF*

>peptide 2 (78 aa)
MRYGSTRLHADWSVPKPCDSTTTRSPVPTTRTFRICSSFAPLGAPPTIASPELDAGAGLLPPLPPPPLLLLLLGLRGCV

>peptide 3 (83 aa)
LGEKIEMKTDEYSYASRNISSAHSTCYRTGSWHLLPSLLRQVKIDAVKIQRRKYGVDPVRTRGPVKPAGSGSNFFSLFAFFWC*

>peptide 4 (45 aa)
MRTSLAKRSGRRMEARMPIMAETEWPTKAQRGMRSASRMASRSST*

>peptide 5 (53 aa)
MPSTPRRSVLNTLWQTCSEMSGRMLNSVRLNSCTAAGTSAPTASGAYPLAHAS*

Sequence

>CNT30683958
TTCTCGGCGAAAAGATAGAGATGAAAACTGATGAGTACTCGTACGCCTCGAGAAATATTTCGAGTGCTCATAGTACGTGCTACAGGACAGGCTCCTGGCA
TCTTCTTCCGAGTCTTTTGAGGCAAGTAAAAATCGATGCGGTAAAAATACAGAGAAGAAAATACGGGGTAGACCCCGTACGTACGCGCGGGCCGGTGAAA
CCAGCAGGCAGCGGCAGTAATTTCTTCTCTCTCTTTGCTTTTTTCTGGTGCTAGAACCGGGCGAGCGCGCGGCGGAGCACCTGGGCGAGGAGGCTGGGGG
CGCTGAGGTGGGGGAGGTGGCCCTCCGTCGGCAGGGGCTCGATGGTGGTGCGCCCGCCGAGGTGGGCCCTGAGGTAGGCGGCGACGTTGGCCGGCACGGA
GACGTCGCGGGGGGCCTGCACCATGCCCAGCACGCCGCGGAGGTCCGTCTTGAACACGCTCTGGCAGACGTGCAGCGAGATGTCCGGCCGCATGTTGAAC
AGCGTCCGGCTGAACTCCTGCACCGCCGCCGGCACGTCCGCGCCCACCGCCAGCGGCGCGTACCCCTTGGCCCACGCCTCGTAGTTGGCCGACATCGCCT
GGAACACCTGCTGGATCTCCTCCAGCTCGAACCCGCCGCGCCGATGAGGACGAGCTTGGCGAAGAGGTCGGGGCGGCGGATGGAGGCGAGGATGCCGATC
ATGGCGGAGACGGAGTGGCCGACGAAGGCGCAGCGCGGGATGCGGAGCGCGTCGAGGATGGCGAGCAGGTCGTCCACGTAAGCGTCCAGGTTGTTGTAGC
GGCGGAAGTCGAAGTGGTCCGGGTTGACGCTGCCGGCGCAGACGAGGTCGTAGAGCACCACGCGGTGCTCGCGGATGAGGTACGGCAGCACGCGGCTCCA
CGCCGACTGGTCCGTGCCGAAGCCGTGCGACAGCACCACCACGCGCTCGCCGGTGCCCACCACCCGCACGTTCAGGATCTGCAGCAGCTTCGCCCCGCTC
GGCGCGCCCCCCACCATCGCCTCGCCGGAGCTGGACGCCGGGGCCGGGCTGCTACCTCCGCTGCCGCCGCCGCCGCTGCTGCTGCTGCTGCTGGGGCTGA
GGGGATGCGTGGA