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Detailed information on CNT30683923


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 0.0

BLAST vs NONCODE:
NONGMAT000778, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640184Triticum urartuNymphaea colorata36.2843.8683.13332forward
CNT30532226Triticum urartuEucalyptus grandis34.2143.2983.07313forward
CNT30276060Triticum urartuChenopodium quinoa33.3348.1182.3305forward
CNT3019597Triticum urartuCitrullus lanatus17.9221.9382.93164forward
CNT30405823Triticum urartuBeta vulgaris25.7952.4484.32236forward
CNT30711584Triticum urartuGlycine max38.2549.7283.14350forward
CNT30191206Triticum urartuSecale cereale83.7262.5897.65766forward
CNT30300473Triticum urartuTriticum aestivum52.7949.995.65483forward
CNT30224354Triticum urartuHordeum vulgare54.7596.5393.61501forward
CNT30395070Triticum urartuTriticum turgidum83.6110096.73765forward
CNT30561656Triticum urartuActinidia chinensis87.156.9382.94797forward
CNT30552635Triticum urartuOryza glaberrima55.348.7589.13506forward
CNT30143750Triticum urartuMedicago truncatula18.6922.3283.04171forward
CNT30441158Triticum urartuAegilops tauschii57.669.4395.64527forward
CNT3014085Triticum urartuZea mays34.4351.6487.62315forward
CNT30605685Triticum urartuGossypium raimondii48.4257.9883.52443forward
CNT30722731Triticum urartuTriticum spelta12.3522.1195.58113forward
CNT30345702Triticum urartuEragrostis tef33.553886.97307forward
CNT30596122Triticum urartuOryza meridionalis37.815092.2346forward
CNT30359537Triticum urartuLactuca sativa36.2850.3881.63332forward
CNT30369654Triticum urartuOryza glumipatula50.3852.3989.15461forward
CNT30153558Triticum urartuPrunus persica15.1941.1282.73139forward
CNT30705326Triticum urartuPrunus avium28.9620.6283.4265forward
CNT30107537Triticum urartuOryza longistaminata38.3638.1987.75351forward
CNT30332479Triticum urartuDioscorea rotundata13.0142.0583.19119forward
CNT30149525Triticum urartuBrachypodium distachyon12.939.0791.53118forward
CNT30100253Triticum urartuOryza rufipogon65.2554.1789.45597forward
CNT30575986Triticum urartuOryza barthii44.1534.2191.09404forward
CNT30497701Triticum urartuDigitaria exilis35.4199.6989.2324forward
CNT30116094Triticum urartuOryza nivara55.0857.2789.29504forward
CNT30604019Triticum urartuOryza punctata33.3390.2491.8305forward

Expression of CNT30683923

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MPRMFSSHSAPSFDAHWNPATTESLISFRYCTPLHMSTTMLGPVVSGPKHQIFLARSLSQPNSSDRILERTLGSSRGPMRPSSIASASPSSNGRASM*

>peptide 2 (40 aa)
MTVRQDFSRTVSRKETTGGETIISAPPMKSSCRSFKQISR*

>peptide 3 (31 aa)
MICSPDSSMLQRTIGSDLARRFKPSTSLGRSE

>peptide 4 (85 aa)
MLVGGLAHDSAAGLLQNSLTEGDDRRGNNNFSTTHEVLLQILQTDFKVKLSSSSNDMLTRLFNATENHRVRLGQTLQTLNKLRKIR

>peptide 5 (53 aa)
SDRGVICSLRPFLLRISVTSVADWVPGSKGSEAMMSQCGVPCLCISSNTCPLF*

Sequence

>CNT30683923
TCGGATAGGGGGGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATCTCCGTCACGAGCGTCGCCGACTGGGTGCCGGGGTCCAAAGGATCGGAGGCCA
TGATGTCCCAGTGTGGGGTACCTTGCCTCTGCATCTCCTCGAACACGTGCCCTCTCTTCTGATTCAGCACACCATAGATACCACCAAGTGCGTTCTCCGG
GGCCTGGATCTCAACCAGGTACACGGGCTCCAGCAGCCTTGGCTTGGCAGTGAGCTGAGAAGCGTAAATGACCCTCCTCGCCGTTGGGATGACCTGACCA
CCGCCCCTGTGAATAGCATCAGTGTGGAGAACAACATCACAGACCTCATAGCAGATGCCGCGCATGTTCTCCTCACATAGTGCTCCTTCTTTTGATGCCC
ACTGGAACCCAGCCACAACAGAGTCCTTGATTTCATTCAGATACTGCACTCCCTTACACATGTCCACAACCATGTTGGGGCCAGTCGTCTCAGGTCCAAA
GCACCAAATCTTCTTGGCAAGATCCTTGTCCCAACCAAACTCCTCAGACAGGATCTTGGAGCGCACCTTAGGATCATCACGTGGGCCAATGCGGCCATCA
TCAATAGCCTCAGCCAGTCCCTCCTCCAATGGGCGAGCTTCCATGTAGAGACGGTTATGCTTGTTGGGGGACTTGCTCATGACAGTGCGGCAGGACTTCT
CCAGAACAGTCTCACGGAAGGAGACGACAGGAGGGGAAACAATAATTTCAGCACCACCCATGAAGTCCTCCTGCAGATCCTTCAAACAGATTTCAAGGTG
AAGCTCTCCAGCTCCAGCAATGATATGCTCACCAGACTCTTCAATGCTACAGAGAACCATAGGGTCAGACTTGGCCAGACGCTTCAAACCCTCAACAAGC
TTAGGAAGATCAGAA