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Detailed information on CNT30683907


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10QA5|D14_ORYSJ, E-value = 3e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Triticum urartuOryza sativa48.435.8990.25318forward
CNT30678417Triticum urartuSetaria viridis24.6649.0988.89162forward
CNT30524833Triticum urartuPhaseolus vulgaris28.1612.2387.03185forward
CNT30553163Triticum urartuOryza glaberrima57.5327.4988.36378forward
CNT30439764Triticum urartuAegilops tauschii71.84101.0791.53472forward
CNT30448528Triticum urartuSaccharum spontaneum28.7712.1889.95189forward
CNT301613Triticum urartuZea mays40.3346.4990.94265forward
CNT30361641Triticum urartuSorghum bicolor31.217.4291.22205forward
CNT30369879Triticum urartuOryza glumipatula57.5352.6588.36378forward
CNT30100699Triticum urartuOryza rufipogon46.5827.8290.2306forward
CNT30575527Triticum urartuOryza barthii34.5535.9790.31227forward
CNT30116295Triticum urartuOryza nivara35.4624.7390.56233forward

Expression of CNT30683907

Peptides detected in this lncRNA

>peptide 1 (89 aa)
KDKSFLLGEKIEMKTDEYSYASRNISSAHSTCYRTGSWHLLPSLLRQVKIDAVKIQRRKYGVDPVRTRGPVKPAGSGSNFFSLFAFFWC*

>peptide 2 (53 aa)
MPSTPRRSVLNTLWQTCSEMSGRMLNSVRLNSCTAAGTSAPTASGAYPLAHAS*

>peptide 3 (29 aa)
MSTRTPREIFRVLIVRATGQAPGIFFRVF*

Sequence

>CNT30683907
GAAAAGACAAATCTTTTCTTCTCGGCGAAAAGATAGAGATGAAAACTGATGAGTACTCGTACGCCTCGAGAAATATTTCGAGTGCTCATAGTACGTGCTA
CAGGACAGGCTCCTGGCATCTTCTTCCGAGTCTTTTGAGGCAAGTAAAAATCGATGCGGTAAAAATACAGAGAAGAAAATACGGGGTAGACCCCGTACGT
ACGCGCGGGCCGGTGAAACCAGCAGGCAGCGGCAGTAATTTCTTCTCTCTCTTTGCTTTTTTCTGGTGCTAGAACCGGGCGAGCGCGCGGCGGAGCACCT
GGGCGAGGAGGCTGGGGGCGCTGAGGTAGGCGGCGACGTTGGCCGGCACGGAGACGTCGCGGGTGGTCTGCACCACCACGCAGGGGGCCTGCACCATGCC
CAGCACGCCGCGGAGGTCCGTCTTGAACACGCTCTGGCAGACGTGCAGCGAGATGTCCGGCCGCATGTTGAACAGCGTCCGGCTGAACTCCTGCACCGCC
GCCGGCACGTCCGCGCCCACCGCCAGCGGCGCGTACCCCTTGGCCCACGCCTCGTAGTTGGCCGACATCGCCTGGAACACCTGCTGGATCTCCTCCAGCT
CGAACCCGCCGTGGTAGTCGCTGTCGTTCAAGAACCTGCTCGATCGATCGATCGATT