Detailed information on CNT30683741


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 6e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697185Triticum urartuOryza sativa37.4141.8689.51162forward
CNT30677073Triticum urartuSetaria viridis30.958.8989.55134forward
CNT30273043Triticum urartuChenopodium quinoa22.173.8588.5496forward
CNT30381337Triticum urartuManihot esculenta21.947.8484.2195forward
CNT30632098Triticum urartuVigna unguiculata22.6313.1784.6998forward
CNT30365623Triticum urartuSorghum bicolor27.2510.5790.68118forward
CNT3029174Triticum urartuTheobroma cacao29.7912.8682.95129forward
CNT30104230Triticum urartuOryza rufipogon37.416.5889.51162forward
CNT30551796Triticum urartuOryza brachyantha36.0319.9289.74156forward

Expression of CNT30683741

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MHVPIWSEISGQPTLSTLIPGTIPCSTRMSTIFFPSTVD*

Sequence

>CNT30683741
CTAAGCTTGAAATAAACCCGGGATCATCAGTTTTTGCTTGTAATGTATAGCTAGTCACATGAGCACATATGATTGTTCTGATGCATTAGTAATAGTAGCA
GTTTGGATCTTCAGTTTAGAATTGTTTTAATTAAAAAAGGCTCTAAGAAGGGAATGCATGTGCCAATTTGGAGTGAAATCAGTGGACAGCCTACCTTGTC
AACCTTGATACCGGGAACTATTCCCTGCTCGACAAGGATGTCAACAATCTTCTTTCCATCAACAGTCGACTGAGATGTAGTTTCCCAAGCCTGGTGGAGT
GACAAGAAGGGTCCGGTAAGCCTGGCGGTTAGCCTCGGTGTTCTCAAGGCCAATCGAGGCAAGTCTCTTGCCACAGGTGGCATTCGACTCATCCATGGCA
AGGATACCCCTGCCTGGCGATGCGATGGTTTTC