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Detailed information on CNT30683585


BLAST search results

BLAST vs Swiss-Prot:
sp|P11600|GLNA_DUNSA, E-value = 2e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549182Triticum urartuIpomoea triloba11.1823.5991.5571forward
CNT30296689Triticum urartuTriticum aestivum26.4631.8898.21168forward
CNT30391155Triticum urartuTriticum turgidum10091.599.21635forward
CNT30250445Triticum urartuAvena sativa22.3626.0193.66142forward
CNT30458448Triticum urartuSaccharum spontaneum20.6319.8589.31131forward
CNT30137282Triticum urartuLolium perenne22.9934.0395.21146forward
CNT30351207Triticum urartuEragrostis tef22.221.6393.62141forward
CNT30364720Triticum urartuSorghum bicolor24.4124.4583.23155forward
CNT30483918Triticum urartuChara braunii21.5712.2181.75137forward
CNT30100365Triticum urartuOryza rufipogon19.6921.0190.4125forward
CNT30575092Triticum urartuOryza barthii26.4621.8286.9168forward
CNT3040612Triticum urartuMarchantia polymorpha28.8218.6788.52183forward

Expression of CNT30683585

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MDAPRSATPHLKVLMSAVSWWPVRRRCAARAACPASRWPS*

>peptide 2 (29 aa)
TRFHDFIYRNEETTLFSEHTEDSYSYLNE*

>peptide 3 (29 aa)
MCCACRLPSFSMAVLITPYPPASRIDLVL*

Sequence

>CNT30683585
CACAAGGTTCCATGATTTCATTTATCGGAATGAGGAAACAACATTATTTTCAGAGCACACTGAGGACTCTTACTCTTATCTGAACGAGTGAAGTGAAAGA
CACGCCCCAAAAACAGACTAGACCTTGCAAAAGAAACGGAAAACACGAAACATTTTGCAGAAATTAATCAATGGCCACCCTCGATCGAGAAGGTCGAGAG
CCTAAGTGTCGTCCGGCGGTGTGGTAGGCATTGGCTGCTGGTCGCTCAGAGCTCAGAGGAGGAGGGTGGTCTCGGCGATCATGGAGGTGACGACGTAGGG
GTCCATGTTGGAGGCCGGCCTGCGGTCCTCGAAGTAGCCCTTGCCGTCCTTCTCCGTGTCGCGGCCCACGCGGATGGACGCGCCGCGGTCCGCCACGCCC
CACTTGAAGGTGTTGATGTCGGCGGTCTCGTGGTGGCCCGTGAGGCGGCGATGTGCTGCGCGTGCCGCTTGCCCAGCTTCTCGATGGCCGTCTTGATCAC
GCCGTACCCGCCGGCCTCCCGCATCGACTTGGTGCTGTAGTTGGTGTGCGCGCCGGCGCCGTTCCAGTCGCCCGGGATCGGCTTCGGGTCCAGGGACAGC
ACCACCCCGGCAACCTCCGTGATCCTCTGCAGCAT