Detailed information on CNT30683535


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30295245Triticum urartuTriticum aestivum37.6843.34100231forward
CNT30662382Triticum urartuTriticum dicoccoides11.263010069forward
CNT30137084Triticum urartuLolium perenne28.8759.687.01177forward
CNT30369796Triticum urartuOryza glumipatula23.9831.7582.99147forward
CNT30585318Triticum urartuEchinochloa crusgalli26.9214.7385.45165forward

Expression of CNT30683535

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLICCGKKRRREDGLDWMGWRFSESCSLAL*

>peptide 2 (71 aa)
EHGLLVLGADDLDQLVVLLLLLCLRFIFDIGQPGGLPLLGALEVAHVRLLLLDLAQLALDDGGGGVDGGVG*

>peptide 3 (69 aa)
STVSSSSAPMTSTSSSSSSSSSASDSSSTSDSPEDCHSLVPLRWRTSVSFSLILRSLRLTTAAAASMEA*

>peptide 4 (56 aa)
MSTATPPLPSPPCSSAAARRGEEKMDWIGWAGDSLNLAHLLCRSRADAVQSVYPGE*

Sequence

>CNT30683535
GAGCACGGTCTCCTCGTCCTCGGCGCCGATGACCTCGACCAGCTCGTCGTCCTCCTCCTCCTCCTCTGCCTCCGATTCATCTTCGACATCGGACAGCCCG
GAGGACTGCCACTCCTTGGTGCCCTTGAGGTGGCGCACGTCCGTCTCCTTCTCCTTGATCTTGCGCAGCTTGCGCTTGACGACGGCGGCGGCGGCGTCGA
TGGAGGCGTAGGATGACTCCTCCTCCTCCTCGGCGCGCACGACGCCGTGGCGCCTGGTGAAGAGCGTGACCTCGCAGCGGGAGAGCTTGGGGCCCTTGCT
GAGGGGCGGTCGGTGGCGGCGGCCAGGGTGAGGGCGCGGCCGAGGAAGCCGGAGCGGAGGGCGCGGGGGCTGGGAGCGGCGCGGTGGCGGGTGCGAGGGG
TGAGGACGGAGGAGGATGTCGACGGCCACGCCGCCGCTGCCGTCGCCGCCATGCTCATCTGCTGCGGCAAGAAGAGGAGAAGAGAAGATGGATTGGATTG
GATGGGCTGGCGATTCTCTGAATCTTGCTCACTTGCTTTGTAGGAGTAGAGCAGATGCAGTGCAGAGTGTGTACCCAGGGGAGTGATGTGGATTGGTCCT
ATCCTATCTAGAT