Detailed information on CNT306835


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08069|RS8_MAIZE, E-value = 2e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30147173Zea maysMedicago truncatula6457.7882.69208forward
CNT30680265Zea maysTriticum urartu71.6961.3290.13233forward
CNT30364349Zea maysSorghum bicolor85.8591.1896.06279forward
CNT30105794Zea maysOryza longistaminata87.6985.3392.28285forward
CNT30111884Zea maysFicus carica53.8575.4380.57175forward

Expression of CNT306835

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGQHQLAQWHSSQGFVSSQAHCLMHCRPRRGYGSCG*

>peptide 2 (37 aa)
MSSYQYQGEEPSTSRYLHEHGPSSLSYCLTTWCWPAGD

>peptide 3 (50 aa)
LSIILLCSRGFLLPTNVNSIVSEVPLLEWGSINLHNGTLHKGLCPHKLIV*

Sequence

>CNT306835
CCTCAGCATTATCCTTCTTTGCAGCAGGGGTTTTCTTCTTCCTACCAATGTCAACTCCATAGTGAGTGAGGTACCACTGCTTGAATGGGGCAGCATCAAC
TTGCACAATGGCACTCTTCACAAGGGTTTGTGTCCTCACAAGCTCATTGTTTGATGCATTGTAGACCACGTCGAGGATACGGGTCTTGCGGGTAACAGCT
TCACTTCCCCATGAGTAGTTACCAGTATCAAGGCGAAGAGCCCTCCACTTCACGTTACCTCCACGAACACGGACCCTCCTCACTGTCTTATTGCTTGACA
ACTTGGTGTTGGCCGGCTGGCGACC