Detailed information on CNT3068336


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693637Leersia perrieriOryza sativa74.9574.1383.54407forward
CNT30552475Leersia perrieriOryza glaberrima56.3532.2186.93306forward
CNT30596145Leersia perrieriOryza meridionalis38.679.2189.52210forward
CNT30370347Leersia perrieriOryza glumipatula49.7236.7887.78270forward
CNT30101375Leersia perrieriOryza rufipogon76.2448.5981.88414forward
CNT30576967Leersia perrieriOryza barthii57.2723.1188.42311forward
CNT30117659Leersia perrieriOryza nivara38.674.9788.57210reverse complement

Expression of CNT3068336

Peptides detected in this lncRNA

>peptide 1 (31 aa)
EDITSLDMSMTTLYIHQPKRYLLGRRKRIRT*

>peptide 2 (40 aa)
MESTFRWFWFHVKIRPESSGIIETSHVPHPVRVNFGPSVL*

>peptide 3 (49 aa)
MRNAWMIKEVDWGPNQDLLQVYFYLITSHLDHRRQETKFYTFWIRIRAS*

Sequence

>CNT3068336
ATGAGGACATAACTAGCTTAGATATGAGCATGACTACCTTATATATTCATCAACCAAAGAGGTACTTGCTTGGGAGAAGAAAAAGAATCCGGACATGAGG
AATGCATGGATGATCAAAGAAGTTGATTGGGGACCAAACCAAGACCTTCTCCAAGTCTACTTCTACCTCATCACGTCACATTTGGACCATAGAAGGCAAG
AGACCAAGTTCTACACGTTTTGGATTCGGATTCGGGCCTCCTGACAGCATCAACTTAAAACGGACATTGCCGTTGATCTAGAAGGGTTCTCGACGCCCAC
GAGTACTTGTTGGAAAGCTTATGGAGTCTACTTTCAGATGGTTTTGGTTTCACGTCAAAATTCGTCCTGAGTCATCGGGAATCATCGAAACAAGCCACGT
ACCTCATCCAGTCCGAGTCAACTTTGGACCTTCGGTCTTGTAATTGTGTCGTGGGCTTAGGCCCATAAGGAGGACGCCCCTCCCTGGTTGTTTTGTAACC
CTAGGACGTCCCTAACCTATATATATCAGTAGCCATCGCCTAG