Detailed information on CNT3068331


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696990Leersia perrieriOryza sativa36.7732.690.43282forward
CNT30676219Leersia perrieriSetaria viridis19.0460.0897.26146forward
CNT30377016Leersia perrieriArabidopsis thaliana10.8222.884.3483forward
CNT30597047Leersia perrieriOryza meridionalis21.3816.8785.37164forward
CNT30371334Leersia perrieriOryza glumipatula36.7733.2990.43282forward
CNT30570192Leersia perrieriVitis vinifera12.9122.8182.8399forward
CNT30578122Leersia perrieriOryza barthii36.7735.7990.43282forward
CNT30117905Leersia perrieriOryza nivara36.7724.4290.43282forward

Expression of CNT3068331

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSVLKTKLINAVYFYFRPSIGSISTTCNCDDTLATVPSRY*

>peptide 2 (62 aa)
MPSLASAASPSLVYLPSCASELALARSSSAFCVASTSDCPPDKNCIYPNIVISEFTINNFNC*

>peptide 3 (29 aa)
MYISNALGRPCDEYMRRNLTIPCLFLRQN*

Sequence

>CNT3068331
AACACAAAAGCTAGCCACATACATCAAGTTCAGAGTAAACACAGAATAATCCATACGCAGCGATAGACAGGAGTCAGAGAAAGAGGCAAAACACAAGATA
TGTATATATCAAACGCTCTAGGAAGACCATGTGATGAATACATGAGGAGGAACTTAACCATTCCATGTCTGTTCTTAAGACAAAATTAATTAACGCAGTA
TACTTTTACTTTCGTCCATCGATCGGATCGATCTCAACAACCTGTAACTGTGACGACACACTGGCTACAGTGCCCTCAAGGTACTAGCAGTATCTGTAGT
ACGTAGCAGCAGCAACAGCTTCACTGATAGATTGAGAAATTAGTAGACGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGCTG
GTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTTCTGCGTCGCCTCCACCTCCGACTGCCCACCCGACAAGAACTGCA
TATATCCAAACATAGTCATCTCAGAGTTCACAATCAACAACTTCAATTGCTAGAGTATTCCTGATCAGCATTGATTAATAGCTTTTTAATCTCCAGTTTC
TTGATCAGCATTAAGAAGCAATATTGATAATTTTCTAAACTTTAGTTTCAGTTTCTTGATCAGCATTAAGAGGCAATATTGATAATTTTCTGAACTTTAG
TTTCAGTTTCTTGATTGACAACTGCAGTGATAGATAGGAGCATTATCATTCAAGAAGAAGGTAGCAA