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Detailed information on CNT3068317


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQK9|NLTP1_ORYSJ, E-value = 4e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697883Leersia perrieriOryza sativa36.427.8786.81182forward
CNT30677036Leersia perrieriSetaria viridis19.242.4890.6296forward
CNT30523932Leersia perrieriSetaria italica19.427.7191.7597forward
CNT30555885Leersia perrieriOryza glaberrima36.416.7388.46182forward
CNT30471439Leersia perrieriSaccharum spontaneum19.636.8493.8898forward
CNT30367564Leersia perrieriSorghum bicolor21.218.4384.91106forward
CNT30371496Leersia perrieriOryza glumipatula19.632.8993.8898forward
CNT30151138Leersia perrieriBrachypodium distachyon12.220.6190.1661forward
CNT30104631Leersia perrieriOryza rufipogon36.452.386.26182forward
CNT30578263Leersia perrieriOryza barthii36.417.8886.81182forward
CNT30498573Leersia perrieriDigitaria exilis19.420.3488.6697forward
CNT30117815Leersia perrieriOryza nivara35.851.8891.62179forward

Expression of CNT3068317

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MLTPHLEGMLAALPALRPLMPRAAFLRQLQAVRRSAVVRAAALRLLTPLQQAADGPAPPRA*

>peptide 2 (32 aa)
MATVACGAASSRAATSAATNTSCARAAAMVCC*

Sequence

>CNT3068317
CGCCGTAGAAAGAATTGAAGATGGTCGCTAATTAAAAACCTGGAGCAGTCGATGGAGGCGCTGATGGTGTAAGGGATGCTAACGCCGCACTTGGAGGGGA
TGCTGGCAGCGTTGCCGGCGTTGAGGCCCCTGATGCCACGGGCGGCGTTCTTGAGGCAGTTGCAGGCGGTGCGGCGGTCGGCGGTGGTGCGGGCGGCGGC
GTTGAGGCTCCTCACGCCGCTGCAGCAGGCCGCCGACGGCCCGGCGCCGCCGCGGGCGTAGGTCAGGCAGGGGCCCACCGCCGAGTTCACCTGGCCGCAG
GTGATGGCCACGGTGGCGTGTGGCGCGGCGAGCAGCAGAGCTGCCACGAGTGCGGCGACCAACACCAGCTGTGCACGGGCGGCGGCCATGGTTTGCTGCT
GATACTGTAGTGTTTTTGCTAGCTGAGCTCAGCTGACTTGTCTGCTCGATCGATCTTTGCAGTTGCTGGTTAGCGGTGTTGGTTGGCGGGAATGGATGAG