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Detailed information on CNT3068273


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071898Leersia perrieriQuercus suber23.6847.9980.45179forward
CNT30224824Leersia perrieriHordeum vulgare28.3138.8486.92214forward
CNT30371297Leersia perrieriOryza glumipatula40.7487.2582.79308reverse complement
CNT30105029Leersia perrieriOryza longistaminata61.64101.0888.63466forward
CNT30104659Leersia perrieriOryza rufipogon62.4397.5288.98472forward
CNT30578572Leersia perrieriOryza barthii61.5199.3688.82465forward
CNT30582636Leersia perrieriEchinochloa crusgalli26.5941.3690.05201forward
CNT30496955Leersia perrieriDigitaria exilis26.5944.6787.06201forward
CNT30118011Leersia perrieriOryza nivara51.8598.9987.76392forward
CNT30593120Leersia perrieriEragrostis curvula20.3754.4290.91154forward
CNT30604793Leersia perrieriOryza punctata59.7997.6286.73452forward

Expression of CNT3068273

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PCPRGMSMTRRLGWGCPELGATGWLMIDG*

>peptide 2 (53 aa)
MNIQSFASIIPPDVTWKTSSPSGRLGASKILQTRCSPLPFLSINRMVAACAST*

Sequence

>CNT3068273
GCCCTGCCCACGCGGAATGAGTATGACTCGCCGACTCGGTTGGGGGTGCCCGGAGCTAGGAGCAACCGGCTGGCTGATGATTGATGGATGAACCGGCCGA
AAAGGCTCTGTTTTTTTGTTTCGGTCCACTTTGAAAATCTTAGCAGATGCTGGGCTTCTTCTGTGATTTAACCGAATATTACAGACCAAGGGACAGAAGA
ACTGGAGTATACAGATCAGACCAACGTCCTTAAGGAAAAATCCCAGCATAAGCAGCACAAAAACATGTTTGAGGTTTGATGAAGAACAACATGTTAACCT
CTTATATTTTCATTTAAGACAATACTCGAGTTTGTTTCAGTACAACTAATGATCTCATAAGCATAGGAAAACACCCATTATGAGGTATAATCGTCTGGAT
AAATGAGGTTGCCTATTTCCTCAGCAGTGGCAAAAATATAGTAGCATCAGCAGTGGTTTTGTCAATGCACCTAGGCTAATCTATATAGCCTATACAGGAA
TTCACTAGGACCTGAATAATTTGAAGACAGGAAACACCCTCAATGAACATTCAGTCTTTCGCATCCATTATTCCACCTGATGTTACCTGGAAAACGTCTT
CTCCTTCAGGCAGGTTAGGGGCATCAAAGATCTTGCAGACACGCTGCTCTCCTTTGCCTTTCCTCAGCATCAACCGGATGGTGGCTGCATGCGCCAGCAC
GTGACCTCCAGCAGGTTTCTTCGGGTCAGTTATGAACATTCCACCACCTGGGTCCG