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Detailed information on CNT30682697


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZT94|POLR2_ARATH, E-value = 8e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595548Triticum urartuOryza meridionalis23.1275.7297.83184reverse complement
CNT30577864Triticum urartuOryza barthii24.1234.4197.92192forward

Expression of CNT30682697

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MTLHFSLIHLTAVVPCFFFYVDDMLITGDDQKYIAFVKKKLSEQFKMSD*

>peptide 2 (45 aa)
MLSFMVIYMSFFYMQPPLGIEVPDGHVCRLRKALYGKKATTSCLV*

>peptide 3 (36 aa)
MVMFVAFERPSMGKKQPPRAWFERFSSGGSSCWFLF*

Sequence

>CNT30682697
GTGGTCGTAACGTAATTGGTTAGTGGGGAAAAATCCGGGCCGGGACTCAAAAGAATTTGGCGAAGTGTTTGTTCCTGAACGAGGGAAGTGGAAAGACAAA
GAGGGATAGGGAGCTCGCCTCCTTCTTTTTTGTAATCGCCGAAATTGTACGACGACCCTTCTTGTTCCAGGCATACGACCCTGAGACGTGACAGTTATAT
AAATAAGAATAAGAAAGAGAAGCGTGATGTTGTCGTGTTGTCAGCAATCAAATTCTCGTAAATAGATAGTACGGTGTTGTTTCAATTTTCTGTTCGTACT
CTGATTGCTGGCTGCAGCTCGATCTTGGCAAATCTCTCAAATGGATGTAAAAAATGCTTTCCTTCATGGTGATCTACATGAGTTTTTTCTATATGCAGCC
ACCTCTGGGTATTGAAGTTCCTGATGGTCATGTTTGTCGCCTTCGAAAGGCCCTCTATGGGAAAAAAGCAACCACCTCGTGCTTGGTTTGAGCGGTTCAG
CTCTGGTGGTTCAAGCTGCTGGTTTCTCTTCTAGTGAGCATGACCCTGCACTTTTCACTCATACATCTGACCGCGGTCGTACCTTGCTTCTTCTTCTATG
TTGATGATATGTTGATCACTGGAGATGATCAGAAGTACATTGCTTTTGTGAAGAAAAAGTTGAGTGAGCAATTCAAGATGTCAGATTGATTTTCTCTCAG
TTATTTTCTGGGAATTGAGGTTGATCAAACTAATGATGGTTACTATCTCTCTCAGCATCGCTATACTCAGGATTTGATCTCACGCTCAGGTCTTAC