Detailed information on CNT30682526


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43767|NLT41_HORVU, E-value = 7e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677036Triticum urartuSetaria viridis15.9636.7385.5483forward
CNT30524117Triticum urartuSetaria italica15.9622.6884.3483forward
CNT30555577Triticum urartuOryza glaberrima12.6923.8386.3666forward
CNT30444120Triticum urartuAegilops tauschii40.1947.2986.6209forward
CNT30471439Triticum urartuSaccharum spontaneum15.9631.285.5483forward
CNT30371496Triticum urartuOryza glumipatula15.9627.8587.9583forward
CNT30104730Triticum urartuOryza rufipogon15.9624.287.9583forward
CNT30578036Triticum urartuOryza barthii15.9627.8587.9583forward
CNT30117813Triticum urartuOryza nivara15.9620.1987.9583forward

Expression of CNT30682526

Peptides detected in this lncRNA

>peptide 1 (60 aa)
KPVRGPMHSLYFHRLSRLLCGVKYLGEIIISTIHILEVKSRVSSMGVKVKSNNSTTVAGH*

>peptide 2 (53 aa)
MAYGMLTLHLEGMSAALPALSPPAALLMQLNVVFLSVVLRTAPASLLTPLQQAA

>peptide 3 (53 aa)
KTRKRSYAFTLFSSSLTVVMWSKVPGRNNNKYNPHTRSKVSCLLNGSESKKQQ*

>peptide 4 (35 aa)
MEIRSERLFVCISDLSILRNVGWRDMRQLWWAVVD*

Sequence

>CNT30682526
AAAACCCGTAAGAGGTCCTATGCATTCACTTTATTTTCATCGTCTCTCACGGTTGTTATGTGGAGTAAAGTACCTGGGAGAAATAATAATAAGTACAATC
CACATACTAGAAGTAAAGTCTCGTGTCTCCTCAATGGGAGTGAAAGTAAAAAGCAACAATAGTACGACAGTGGCCGGCCATTGAAAGCTGGCTCAGCGTA
CGCACTCCTTTCTCCCTCACATGGAGATCAGGTCAGAGCGTTTATTCGTATGTATTTCTGACTTAAGCATACTCAGAAACGTCGGATGGCGCGATATGCG
GCAGCTATGGTGGGCAGTGGTTGATTAGCGAATAGTAGAGCAGTCGAGGGATGGGCTGATGGCGTATGGGATGCTGACGCTGCATTTGGAGGGGATGTCG
GCGGCCTTGCCAGCGTTGAGCCCACCAGCAGCGCTCTTGATGCAGTTGAACGTCGTTTTCTTGTCAGTGGTGCTCCGCACTGCGCCCGCAAGTCTCCTGA
CGCCGCTGCAGCAGGCCGCA