Detailed information on CNT30682377


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10F39|AGO11_ORYSJ, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30222146Triticum urartuHordeum vulgare39.7458.0883.44151forward
CNT30348607Triticum urartuEragrostis tef36.3231.883.33138forward
CNT30574790Triticum urartuOryza barthii44.7438.1282.94170forward

Expression of CNT30682377

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MEARQLLHGSAAGRGVATALARRRLRHLIKLYELRHLSSRKMCIADWRN

>peptide 2 (43 aa)
MLLRTFSWRRGSSCTGALPAEVWPPPWLDDVSDISSNFMNCAT*

>peptide 3 (48 aa)
KQRDGKQQIRWFDSKGSEAPSAATSLGTQHPTSPTGHNRPLLHTTSTR*

Sequence

>CNT30682377
GCAAGCAGAGAGATGGAAAGCAACAAATTAGATGGTTCGATAGTAAAGGTTCTGAGGCACCAAGTGCGGCAACCAGCTTAGGAACACAACATCCCACGAG
TCCAACAGGCCATAACAGGCCACTACTACATACTACTAGTACTAGATAACCAAGCGCATCACCAAAAGTTGGAACGCGGAAGTGCGGCTGGCTGGCTGGC
TCAGCAGAAGAACATGCTGCTGCGGACTTTCTCATGGAGGCGAGGCAGCTCCTGCACGGGAGCGCTGCCGGCAGAGGTGTGGCCACCGCCCTGGCTCGAC
GACGTCTCAGACATCTCATCAAACTTTATGAACTGCGCCACCTGAGCAGCCGCAAGATGTGCATAGCAGATTGGAGAAAC