Detailed information on CNT30682318


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43270|PLDA1_MAIZE, E-value = 4e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30630038Triticum urartuVigna unguiculata26.5212.7486.2187forward
CNT30450970Triticum urartuSaccharum spontaneum33.2328.7691.74109forward
CNT30343100Triticum urartuEragrostis tef259.4186.5982forward
CNT30571726Triticum urartuVitis vinifera42.6829.7284.29140forward
CNT30594293Triticum urartuEragrostis curvula32.933681.48108forward

Expression of CNT30682318

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MNIMPWLSWATFGDGCSREVRLVEVIMVD

>peptide 2 (93 aa)
FRLDAFGLPAVGTSKEVLVLNVDEVLCPSDGIYVCILDAPVNDLILSTYKPSPCSFLRSIREAKSSTTINRSEELDLPIVNEYHAMALLGHLW*

Sequence

>CNT30682318
TTCAGGCTTGATGCCTTCGGGCTTCCAGCAGTAGGAACTTCCAAGGAAGTATTGGTTCTCAATGTAGATGAAGTCCTTTGCCCGTCGGATGGCATTTATG
TATGCATCCTGGATGCTCCTGTCAATGATTTGATCCTTTCCACTTACAAGCCCAGCCCTTGCAGCTTCCTCAGGAGTATCAGGGAAGCCAAAAGCAGCAC
CACCATCAATAGATCTGAAGAGCTGGACCTTCCAATCGTGAATGAATATCATGCCATGGCTCTCTTGGGCCACCTTTGGTGATGGATGCAGTCGCGAAGT
TAGGCTGGTGGAAGTCATCATGGTGGAC