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Detailed information on CNT30682213


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LGE3|FLP1_ORYSJ, E-value = 1e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30363920Triticum urartuSorghum bicolor9.0720.7890.1101forward
CNT3099658Triticum urartuOryza rufipogon10.6822.5484.03119forward
CNT30574804Triticum urartuOryza barthii10.6823.4784.87119forward

Expression of CNT30682213

Peptides detected in this lncRNA

>peptide 1 (29 aa)
TSPPESWCFKIDKARIDVSLSAKTSPSTY*

>peptide 2 (38 aa)
MYIYIYVNTHHVHIHTHAYTCRARTHIHKVEKLTSGDR*

>peptide 3 (51 aa)
MTRKASRFLMTTSYMWTELNWPKSLGREMRSTEERLWNLSMQSPPAPAPPA*

>peptide 4 (33 aa)
MDATVAAAGAHELAVLASIEWPDDQPASKPRRR*

Sequence

>CNT30682213
CACCAGTCCACCAGAGTCGTGGTGCTTTAAGATTGACAAAGCGAGAATAGACGTGTCGCTATCAGCGAAAACATCACCTTCTACGTACTAAATAATATGC
CGCCTTTTGAGACACAACAATATGTATAACTACCCTGCTAACCATTCAATTTCAACCACACGTTAGTTTGGAGTGAATAATTTTCTAATGGCCTCTCCAA
ATCATTACTATACCAAACAAGCTTGATCAAAAGAAGACGAGCAAGTGGCAAGTGATACACAAGGTCCCCGCACATGGCACATCGATAGCATAATACTAGT
AGACAAAATAATAATTAACCACAATACACACGCAGCATGTATATCTACATATACGTCAATACACACCATGTACATATACATACACACGCATATACGTGCA
GGGCACGTACACACATACACAAGGTGGAAAAGTTAACCAGCGGAGATCGATGACGACATGGATGCAACGGTGGCGGCCGCCGGCGCGCACGAGCTAGCTG
TGCTTGCTTCTATCGAATGGCCGGACGATCAGCCAGCCAGCAAGCCTAGACGTCGATGACGCGGAAGGCGTCGCGGTTCTTGATGACGACGTCATACATG
TGGACGGAGCTGAACTGGCCGAAGTCCTTGGGGAGGGAGATGAGGTCGACGGAGGAGCGCTTGTGGAACCTGAGCATGCAGTCGCCGCCGGCGCCGGCCC
CGCCGGCGTAGTAGCGCTCCCAGCCGAGCGCGACGAGCTTGCGCTCCAGGAGGCGTAGGAGGCGACCACCTCCCCCGTGGGCGTGTGGAGCAGCGCCTTG
CGCCGCACCGCCCCGCCGCCGACGCCGGGTGGTTCTCCACCAGCTTCACCACCCCGTTGCGGAACACCCACACGCCAGACATGGCGCTATGTGTGATATG
GTGATCTTTCTCTGGGTAACTTGATGGCCTGGATCTGGATGTGTACTTGATTAGTGTGGTGTGTGTACTTTGGTGATTGTTGAGGCTGGGATTTAGAAAA
GGATGGGGCGTGGGAGGCTATAAATAGAGGCGACCGGTGCATTGCCGCGAGCGGTGGACTGCCTGATACGGACGTTACGTCTCGATGGCGAGAGCGCACC
GGGCATGACCCCGC