Detailed information on CNT30682025


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674377Triticum urartuSetaria viridis12.7531.8287.0177forward
CNT30388932Triticum urartuTriticum turgidum56.2939.4499.71340forward
CNT30238074Triticum urartuBrassica oleracea14.5733.5982.9588forward
CNT30454508Triticum urartuSaccharum spontaneum30.7925.3186.56186forward
CNT30342210Triticum urartuEragrostis tef29.1424.3481.82176forward

Expression of CNT30682025

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MRYAAMISDTSWAIRGTLFRFFTRGMSLDSPIEMIFRLKSDSPLFKNLHSTNHVSL*

>peptide 2 (43 aa)
SIDTSYITTSDMLLHLKQNRNTCFDAVHCHLHVDVTKQKLAEF*

>peptide 3 (37 aa)
MIMSEKKGIDGSFFYKFSRQAWAQTRQNQRSQTRLGA*

>peptide 4 (37 aa)
MDPSSTNSVDKLGLKLGKINGARLDWGHEVRSDDLRH*

Sequence

>CNT30682025
CAAGTATCGACACAAGTTACATAACAACTTCAGATATGCTTCTCCACCTGAAGCAAAACCGGAACACATGCTTTGATGCAGTTCACTGCCACTTACATGT
TGATGTGACTAAGCAAAAACTTGCCGAGTTTTAATACTTTACAGATGAGCACAGGAGGATGTAGATCCTGTTAATTAACCATGGATCATGTGCTCATTCA
GAGACTCTCGAGGAGCATGATGCATGATTATGTCTGAAAAGAAAGGCATAGATGGATCCTTCTTCTACAAATTCAGTAGACAAGCTTGGGCTCAAACTCG
GCAAAATCAACGGAGCCAGACTCGATTGGGGGCATGAGGTACGCAGCGATGATCTCAGACACTAGTTGGGCAATAAGAGGAACCCTCTTCAGGTTCTTCA
CCAGGGGCATGTCGTTGGACTCTCCTATAGAAATGATCTTCAGGTTGAAGTCGGACAGCCCCTTGTTCAAGAACCTACACAGCACGAATCATGTTTCTTT
ATGAATAACACAAATCATGCTGAGAACTAGAGTAGTAAACTACAGTACTAGTAGTTAATAGTTGATAATTCTTTCGAAATTGAGTTGAAGCTTAAACTTT
TTAC